Gene Vapar_5216 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5216 
Symbol 
ID7969875 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp5537130 
End bp5537834 
Gene Length705 bp 
Protein Length234 aa 
Translation table11 
GC content69% 
IMG OID644795810 
Producttranscriptional regulator, GntR family 
Protein accessionYP_002947084 
Protein GI239818174 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.293373 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCCGA AGCAGCACCA GCAGCAAAAG AAAACAATGG CCCCCCCGAA GACCGCGCCC 
CGCCCCCAGC CCAAGCGACG GGCCGCCGAC CTCGCCTACG ACGCGATCGA GACGCTGCTG 
TCCACGCTGC AGCTGGAGCC CGGCAGCCAG ATCGTCGAGG CCGACCTCGC CGAGCGCACC 
GGCCTCGGCC GCACGCCGGT GCGCGAGGCG CTGATGCGCA TGGTGTCGAT CGGCCTCATC 
GTGCAGCAGC CGCGCCGCGG CCTGCTGGTG TCGACCATCG ACCTGGCCGA CCACCTCGAC 
GTGATCCAGA CCCGGCGCGT GCTCGAACGG CTGATCGCGG CCTGCTCGGC GCGCCGCGCC 
ACCGCGCTGC AGCGCAAGGA AATCGTGCGC TGCGCCGAGC TGATGGTGAA GGCCGCCCAT 
CGCGGCGACC TGAACGACTA CATGCAAGCC GACCGCGCGC TCGACCTCGT CAACCACCAG 
GCGAGCCACA ACGACTCGGC GGTGAAGGCC GTGATCCCGC TCATCGTGCA GTGCCGCCGC 
TTCTGGTACG CCTACCAGCA CGAAGGCGAG ATCGTCGAAG GCGCCAATGC GCACCTCGAA 
CTCGCGCAGG GCATCGCGAC CGGCGACGAG GCCGCGGCCA TTGCCGGCGC CAACCGCCTG 
ACGGATTACC TCGAGCTGTT CGCCCGCAAG GTGATCGACA ACTGA
 
Protein sequence
MKPKQHQQQK KTMAPPKTAP RPQPKRRAAD LAYDAIETLL STLQLEPGSQ IVEADLAERT 
GLGRTPVREA LMRMVSIGLI VQQPRRGLLV STIDLADHLD VIQTRRVLER LIAACSARRA 
TALQRKEIVR CAELMVKAAH RGDLNDYMQA DRALDLVNHQ ASHNDSAVKA VIPLIVQCRR 
FWYAYQHEGE IVEGANAHLE LAQGIATGDE AAAIAGANRL TDYLELFARK VIDN