| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5209 |
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| Symbol | |
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| ID | 7969868 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5531904 |
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| End bp | 5532959 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795803 |
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| Product | Xylose isomerase domain protein TIM barrel |
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| Protein accession | YP_002947077 |
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| Protein GI | 239818167 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.625607 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATGA TCAAGGGCCC GGCCATATTC CTGGCCCAGT TCGCCGGGGA CGAAGCCCCG
TTCAATTCGC TCGACGCCAT TGCCGGCTGG GCCGCCGGGC TGGGCTACAA GGGCGTGCAG
ATCCCGAGCT GGGACGCGCG CCTGTTCGAC CTGAAGAAGG CCGCCGAGAG CAGGACCTAC
TGCGACGAGG TCAAGGGCAC GCTGGCCGCG CACGGCCTGG AGATCACCGA GCTGTCGACC
CACCTCCAGG GCCAGCTGGT CGCGGTGCAC CCGGCCTACG ACGCGGGCTT CGACGGCTTC
GCGGCGCCCG AGGTGCGCGG CGATCCGGTG CGGCGCCAGC AGTGGGCGGT GGAGCAGCTG
CACTTCGCCG CGAAGGCCTC GGCCAACCTG GGGCTCACGG CGCATGCCAC CTTCTCGGGC
GCGCTCGCCT GGCCGTACCT CTATTCGTGG CCGCCGCGCC CGCCGGGGCT CATCGAGGAG
GCCTTCGACG AGCTTGCGCG CCGCTGGCGC CCGATCCTCG ATGCCTTCGA CGCGGCGGGC
GTGGACGTGG GCTACGAGAT CCACCCGGGC GAAGACCTGC ACGACGGCGT GAGCTACGAG
ATGTTCCTGG AGCGCGTGAA CAACCACCCG CGCGCCTGCC TCCTGTACGA CCCGAGCCAC
TTCATGCTGC AGCAGCTCGA CTACCTGGCC TACATCGACC ACTACCACGA GCGCATCAAG
ATCTTCCACG TGAAGGATGC CGAGTTCAAC CCGACCGGCA AGCAGGGCGT CTACGGCGGC
TTCCAGAGCT GGATCAACCG CGCGGGGCGC TTCCGCTCGC TCGGCGACGG GCAGGTCGAT
TTCAGCGCCA TCTTCTCGAA GATGGCGCAG TACGACTTCC CGGGCTGGGC GGTGCTCGAA
TGGGAGTGCT GCATCAAGCA CCCCGAGGAC GGCGCGCGCG AGGGCGCGGC CTTCATTGCC
GACCACATCA TCCGGGTGGC GGAGCGGGCT TTTGACGATT TTGCGGCGGG CGGCGTGGAC
GTGGCCGCCA ACAAGCGGAT GCTGGGGATC GGCTGA
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| Protein sequence | MKMIKGPAIF LAQFAGDEAP FNSLDAIAGW AAGLGYKGVQ IPSWDARLFD LKKAAESRTY
CDEVKGTLAA HGLEITELST HLQGQLVAVH PAYDAGFDGF AAPEVRGDPV RRQQWAVEQL
HFAAKASANL GLTAHATFSG ALAWPYLYSW PPRPPGLIEE AFDELARRWR PILDAFDAAG
VDVGYEIHPG EDLHDGVSYE MFLERVNNHP RACLLYDPSH FMLQQLDYLA YIDHYHERIK
IFHVKDAEFN PTGKQGVYGG FQSWINRAGR FRSLGDGQVD FSAIFSKMAQ YDFPGWAVLE
WECCIKHPED GAREGAAFIA DHIIRVAERA FDDFAAGGVD VAANKRMLGI G
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