| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5183 |
|---|
| Symbol | |
|---|
| ID | 7969842 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5506217 |
|---|
| End bp | 5506819 |
|---|
| Gene Length | 603 bp |
|---|
| Protein Length | 200 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644795777 |
|---|
| Product | type IV pilus modification protein PilV |
|---|
| Protein accession | YP_002947051 |
|---|
| Protein GI | 239818141 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4967] Tfp pilus assembly protein PilV |
|---|
| TIGRFAM ID | [TIGR02523] type IV pilus modification protein PilV
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0958149 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACATGA GAATCCCCAA CACACAGAGA GGCGGCACCC TCATCGAGGT GCTGGTAGCC
ATCGTCATTC TGGCCGTTGC CCTGTTCGGC ATGGCGGGGC TCACGTCGTC TGCCATCAAG
TACAACCAGT TTTCACGCAT GCGAGCCACT GGCTTGAGCC TGGTGGCCGA CTACGCTGAG
CGAGCCCGCG CCAACATCGC CGGCTTTGCT GACTACGCCT ACACCACGGC TTACAACGCC
AGTTCGCGCA CTGCCGCCAC GACCGATCCC ACGGCGGCAC CGGTCAGCTG CCAGGTCGAC
ACCTCTACCC CCACGAACCC GATCAATACC TGTGGTTCGG CCATCGCAGA CTACGACCAG
TCGCAGTGGC TCACCAACGT CGCCAATCGG CTACCTGGCG GCACCGCCTA CGTCACCACG
GAGCTGACAC CTGCTCCGCC TGGCGTGAAC GGTCTGCCGG CCACGCGTGT GTTGAACATA
TGGCTGATCT GGAGCGCCAT CCAGGAAGAC AACGGCTTCG CGCAGCAGCA ACTCTGTCCT
GCGGCCGCCA ACATTTCGGA TCCTGCTTCC GTGAACTGCA TGTATTTCCG GGTCACACTA
TGA
|
|---|
| Protein sequence | MDMRIPNTQR GGTLIEVLVA IVILAVALFG MAGLTSSAIK YNQFSRMRAT GLSLVADYAE
RARANIAGFA DYAYTTAYNA SSRTAATTDP TAAPVSCQVD TSTPTNPINT CGSAIADYDQ
SQWLTNVANR LPGGTAYVTT ELTPAPPGVN GLPATRVLNI WLIWSAIQED NGFAQQQLCP
AAANISDPAS VNCMYFRVTL
|
|---|
| |