| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5182 |
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| Symbol | |
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| ID | 7969841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5505216 |
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| End bp | 5506220 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644795776 |
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| Product | hypothetical protein |
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| Protein accession | YP_002947050 |
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| Protein GI | 239818140 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4966] Tfp pilus assembly protein PilW |
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| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0333814 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGAAGAA AGGCACTCCT GCTCCGCTCA CACGCGCGCT CGTCGGCTGG CGGCTTCACT
CTGCTCGAGC TGCTGATCTC CGTGACCATC GGTTTGGTGA TCCTTGCGGC CAGCCTGTCC
ATGTATGTTG GGTCCAGCCG CGGCAGCCAG CTGTCCCAGA TCGAAACGCA GATGAACGAG
GACGGCATCC TCGCGATCAA CCTCATCCAA CAGCAGCTCA AGCAGGCAGG CTATTCCCGT
CAGATCATTC CAGGCAGCGG TGCCACGGTG ATGGGTAACT ACGCTGGTCC CGCGGTGCGC
GGTTGCGATG GCGGTTTTAC CGATGCGGGT GCCGCCTTCG GAAGCCTCAC TTGCGCCACG
GGCGCTGCGG CCGCCGGCAG CGATGCCATT GCCATCCGAT ACGAGGCGAC CACCGACAAC
ACCATGCCCT CGACCGATGC CTCGCCACTG GCAACCAACT GTCTGGGCAA CGGCATCAAC
GCCGCAACTG CGTCGCAAGT GGCGCCGGCG CCAACGCCCG CTGCCGGCAA CTACGCATTG
GCTGACAACC GCTATTCAGT CACCAACGCC AGCACGCAGC CTATGTTGTC TTGCCAGGGT
TCGGAAAAGA GCGGCACCGG CAACGTCATC GGAACCGCAC AACCGCTGCT GTCGAACGTC
GAAAACATGC AGATCCTCTA CGGCGTGGCC AGTCGTCCCA GCGCCGAATT GGCAGGCACC
TACGATCCGC TGCGGCACCA GATCGTCAGC TATCTGACTG CGACCGGCGT CGACGCTCTG
ACCAGCACCG GCGTGCTGCC CAACATCACC GATGACCGCT GGGGCCGTGT ACTGAGCGTG
CGTGTGTGTC TGCTCATGCG CAGCGATCAG CCCGTTAAAG ACGTGCCCGC GGGCGGCATG
TCCTACAAGA ACTGCAGCAA TGTCGATGTG ACCGGCACCG ATGGCTATCT GCGCAGGGCC
TATGTCACTA CGGTTCTGCT GAGAAACCGC TTGATCATTC AATGA
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| Protein sequence | MRRKALLLRS HARSSAGGFT LLELLISVTI GLVILAASLS MYVGSSRGSQ LSQIETQMNE
DGILAINLIQ QQLKQAGYSR QIIPGSGATV MGNYAGPAVR GCDGGFTDAG AAFGSLTCAT
GAAAAGSDAI AIRYEATTDN TMPSTDASPL ATNCLGNGIN AATASQVAPA PTPAAGNYAL
ADNRYSVTNA STQPMLSCQG SEKSGTGNVI GTAQPLLSNV ENMQILYGVA SRPSAELAGT
YDPLRHQIVS YLTATGVDAL TSTGVLPNIT DDRWGRVLSV RVCLLMRSDQ PVKDVPAGGM
SYKNCSNVDV TGTDGYLRRA YVTTVLLRNR LIIQ
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