| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5159 |
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| Symbol | |
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| ID | 7971530 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5475415 |
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| End bp | 5479599 |
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| Gene Length | 4185 bp |
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| Protein Length | 1394 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795753 |
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| Product | hypothetical protein |
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| Protein accession | YP_002947027 |
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| Protein GI | 239818117 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3164] Predicted membrane protein |
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| TIGRFAM ID | [TIGR02099] conserved hypothetical protein TIGR02099 |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGACA CGGCGTCTTC CCCTTCACGT CTGCTCAAGA TCACCGCTGC GACGGCGCGC
TGGCTGCTGG GTTTACTGAT CGCTGCATGG CTTCTGCTAG CACTGTCAGT GGTTGTCCTA
CACGCGTGGA TTGTGCCGCG AATCGGCGAT TACCGTGGCG CGCTCGAGGC ACAAGCCAGC
AAGGCCATCG GGGTACCCGT GCGCATCGGG TCGATCACGG CGCGTTCCGA TAGTCTCTTT
CCCGCCTTCG AATTGCGCGA CGTGGTGCTG CACGACGCCC AGAAGCGGGA AGCCCTGCGC
CTCGTGCGGG TGGTGGCCAG CGTGTCGCCG CGCTCGCTGT GGCGCCTCAA TTTCGAGCAG
CTCTACATCG AGGGGCCGCA GCTCGACGTG CGCCGCGACG TGCTCGGCAA GCTGCACGTG
GCGGGCCTGC ACATGGACAC CGACACCACC GGAGAGACCC GCGCCGCCGA CTGGTTTTTC
GCCCAGCGCG AGCTGGTGGT CGAAGGCGGC ACCGTGCGCT GGACCGACGA GCAGCGCCAG
GCCGAGCCCC TGCTCCTGAC CGACGTGCGC TTTGTGGCGC GCAACACGGC CCGGCGCCAC
GGCCTCAGGC TCGACGCCAC GCCGCCGGTC GGCTGGGGCG AGCGCTTCAC GCTGCGCGGG
CAGTTCCGCC AGCCGCTGCT GTCGGTGCGC TCGGGCCGCT GGCAGACCTG GGACGGCCAG
GTCTATGCCG ACCTGCCGTA CATGGACGTC ACGCGCCTGG GCCGCTATGT CTCCCTCGAC
GCCCGCATCC GCGAAGGCAG CGGCGCGCTG CGCCTGTGGG CCGACGTGAA GCGGGGCCAA
ATCGTGGGCG GCGCGGCCGA CCTCGGGCTC GACCGCATCG ACGCCTCGCT GGGCCGGGGC
CTGCAGCCGC TGGTGCTGCG CGCGGTGACC GGGCGGCTGG CCGGCCAGCT GGACGAGGAA
AAGCTCGAGT TCTCGACCGC CGCCCTGCAG TTCGACACCG CCGACGGCAT GCGCTGGCCC
GGCGGCAACC TGTGGCTGCA GCATTCGCCC GCGCGCGGCC GCACGCCGGA GCAGGGCGCC
TTGCGCGCCG ACCGGCTCGA CCTGGCCGCG CTGGCCCTCA TTGCCGACCG GCTGCCGCTC
GGCGATGCGA CGCACCGCGT GCTCGACGCC TATGCGCCGC GCGGGCTGGT CGAGCGCATC
GACCTGAACT GGCAAGGCTC GCTGGGCGCT CCCGAGCGCT ACCAGGCCAA GGGGCGGGTC
AGCGGCCTGC GCGTCGCCTC GCAGGCGGCA GCCGCGCCTG AAGCCACCCC CGTCCCGCCG
CCCACGGCGG GCCGGCCCGG CGGCGCCGCG CCGGCCACCC CGCGGCCGCA TGCCGGCTCG
CCGGGCCTGA GCGGCGCCAC CGTCGAGTTC GACGCCAGCC AGGCCGGCGG CAGCGCCGCA
CTGTCGATGG CGCAGGGCAC GCTCGAATTC CCGGGCGTGT TCGAGGAACC GGTCATTCCC
ATCGACCGGC TCGCGGCCCA ATTGCAATGG AAGCTCGACA AGGGCCATGC GCAGCTGCAG
GTTTCCAAGC TGCGCTTCGC CAATGCCGAC GCCGACGGCG AAGCCGAAGC CAGCTGGCGC
ACCAGCGATC CCGCCGTGTC CCGCGGGCAG TCGCTCTATC CCGGCGTGCT CGACCTGCAG
GGCAAGCTGA CCCGCGCCGA CGGCACGCGC GTGTTCCGCT ACCTGCCGCT CGAGATCCCC
CAGCACACGC GCGACTACGT GCGCGATGCG GTCACCAAGG GCACCGCCAG CAGCGTCGAC
TTCCGCGTGC GCGGCGACCT GCACGACATG CCGTTCATGG ACCCGAAGCA GGGCGAGTTC
CGCATCGCGG CCAAGGTGGC CGACGTCAAC TACGCCTATG TGCCGCCGGC CTCGGCGATT
GCCGCGTCGA CGGCATCCAA GGCGCCGGCC TCCGCGGCCC GCGCCGGCGC GCCGGCGCCC
GTGTGGCCCG CGCTCACCGG GCTTTCGGGC GAGCTGGTGT TCGAGCGCGC GGGCATGCTG
GTGCGCAATG CGCGCGGCCG GCTGGCCGGT GCCACCGGCA TCGAGGTGAG CAAGGCCGAG
GCGCAGATTG CCGACATGTC GCACCATGCC GCGCTGCTGC GCGTCGATGC CCAGGCCAAG
GGCCCGCTCG CCGAACTGCT GCGCGTGGGC GCGCCGCTGG CGGGGGAAAC CGGCGAGGTG
CTGTCCCGCG TGCGCGCCAC CGGCACGGCC GACTACCGCC TGCACCTCGA ACTGCCGCTG
GCCGCACTCG AGGCGGCCAA GGTCCAGGCC AGCATCGCGC TCACGGACAA CGAGCTGCAG
CTGGTGCCCG AGGCGCCGTC CTTCGCCCAT GCGAAGGGCG TCGTCGGCTT CACCGAAACG
GGGTTTTCGC TGGCCGGCGT CAGCGCCAGG CTGCTCGGCG GCGAGGTCCG CGTCGAAGGC
CGCGGCCGCT TTGCCGGGCC CGGCCGCGAG GTGGCATTGA AGGCGCAGGG CACCGCCACG
GCCGAGGGCC TGCGCGCGGC GCGCGAGGCC GAGTGGCTCG CGCGCATCGC GGCCAAGGCG
AGCGGCAGCA CGCCCTATGC GGCCACGTTC TCGATGCGCG ACGGCGCGCC GGAGTTCTTG
CTCACCAGCA CGCTGCAGGG GCTGGCGCTG CAGCTGCCCG CACCGCTCGT GAAGACGGCG
GACGAACAGA TGCCGCTGCG CATCGAAAAG AAGGTGCTGC AGCGCGAGAC CCGCGCGGGC
GCCGCCGTCG CCGTGCAGGA CCAGCTCTCG ATGGAGCTCG GCCGCATCGG CGCCGCCCAG
TATGTGCGCG ACATCTCCGG CGCCGAGGCG CGCGTGCTGC GCGGCAGCAT CGGCATCGGC
CTTGCCGCGG GCGAGGCCGC CCCGGTGCCC GACAAGGGCG TGCTGGCCAA CGTCAACGTC
GCGAAGCTCG ACATGCCGGC ATGGCAGGCG CTGGTCGGCG ACACCGCAAG CAGCGCGCCC
GAAGCGGCGG GCGGCGCCGA GCGGCCCGAA GACGCGGCCA CGGGCTACCT GCCCACGCGC
GTCGCGGTGC GTGCGCAGGA ACTCGGCATC GCGGGGCGCA CGCTGCACAA CGTGGTGCTC
GGCGGCACGC GCGACGGTGC GCTCTGGCGC GCCAACATCG ACGCCACCGA GCTCAGCGGC
TACGCCGAAT ACCGCCACAC CCAGGCCGGG CGGCTCTATG CGCGGCTCGC GCGGCTCAAG
ATCGCGCCCA CCGAGGCCAG GCAGGTCGAA ACCCTGCTCG ACGAGCAGCC GGGCACGCTG
CCCGCGCTCG ACATCGTCAT CGACGACTTC GAGCTGCTGG GCAAGCGCCT GGGCCGCGCC
GAGATCGACG CCGTCAACCG CGGCGGCGCG GGCCGCGAAT GGCTGCTCAA CAAGTTGAGC
TTCACCATGC CCGAGGCCAG TTTCTCCGCC AAGGGCACCT GGGCCGCCGC GCCGGGCGGC
ACCCCCGGGC GCGCGGAGCA GCGCCGCACG GCCATGACCT TCAAGCTGGA CATCGCCGAT
GCCGGCGACC TGCTCACGCG CTTCGGCATG TCCGGCGTGC TGCGGCGCGG CAGCGGGCGG
CTCGAAGGCG AGGTCAACTG GCGCGGCTCG CCGTTCTCGC TCGACTATCC TAGCCTGGGC
GGGCAGCTCC AGGTCAACGT CGAATCGGGC CAGTTCCTCA AGGCCGACCC GGGGCTTGCC
AAGCTGCTCG GCGTGCTGAG CCTGCAGGCG CTGCCGCGCC GGCTCACGCT GGATTTCCGC
GATGTCTTCA GCCAGGGCTT CGCCTTCGAC TTCATCCGCG GCGACGCAAA AATACACAAC
GGCATCGCGA GCACCAACAA CCTGCAGATG AAGGGCGTCA ACGCGGGCGC GCTGATGGAC
GGCTCGGCCG ACATCGTGCG CGAAACGCAG GACCTGCGCG TGGTGGTGGT GCCCGAGATC
AACGCCGGCA CCGCCGCGCT GGTGGCCACC GCGATCAACC CCGCGATCGG CCTGGGCACC
TTCCTCGCGC AGTGGGTGCT GAGCAAGCCG CTCGCGGCCG CGGCCACGCA GGAGTTCCAT
ATCCAAGGCA CCTGGGCCGA CCCCAAAATA GCCAAGGTGC CACGATCCAT CCTGCCGAAC
GTGCCCGGCG CTGCCGCGGT GCCGCCCGGC GGTCAGGGCA AGTGA
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| Protein sequence | MNDTASSPSR LLKITAATAR WLLGLLIAAW LLLALSVVVL HAWIVPRIGD YRGALEAQAS
KAIGVPVRIG SITARSDSLF PAFELRDVVL HDAQKREALR LVRVVASVSP RSLWRLNFEQ
LYIEGPQLDV RRDVLGKLHV AGLHMDTDTT GETRAADWFF AQRELVVEGG TVRWTDEQRQ
AEPLLLTDVR FVARNTARRH GLRLDATPPV GWGERFTLRG QFRQPLLSVR SGRWQTWDGQ
VYADLPYMDV TRLGRYVSLD ARIREGSGAL RLWADVKRGQ IVGGAADLGL DRIDASLGRG
LQPLVLRAVT GRLAGQLDEE KLEFSTAALQ FDTADGMRWP GGNLWLQHSP ARGRTPEQGA
LRADRLDLAA LALIADRLPL GDATHRVLDA YAPRGLVERI DLNWQGSLGA PERYQAKGRV
SGLRVASQAA AAPEATPVPP PTAGRPGGAA PATPRPHAGS PGLSGATVEF DASQAGGSAA
LSMAQGTLEF PGVFEEPVIP IDRLAAQLQW KLDKGHAQLQ VSKLRFANAD ADGEAEASWR
TSDPAVSRGQ SLYPGVLDLQ GKLTRADGTR VFRYLPLEIP QHTRDYVRDA VTKGTASSVD
FRVRGDLHDM PFMDPKQGEF RIAAKVADVN YAYVPPASAI AASTASKAPA SAARAGAPAP
VWPALTGLSG ELVFERAGML VRNARGRLAG ATGIEVSKAE AQIADMSHHA ALLRVDAQAK
GPLAELLRVG APLAGETGEV LSRVRATGTA DYRLHLELPL AALEAAKVQA SIALTDNELQ
LVPEAPSFAH AKGVVGFTET GFSLAGVSAR LLGGEVRVEG RGRFAGPGRE VALKAQGTAT
AEGLRAAREA EWLARIAAKA SGSTPYAATF SMRDGAPEFL LTSTLQGLAL QLPAPLVKTA
DEQMPLRIEK KVLQRETRAG AAVAVQDQLS MELGRIGAAQ YVRDISGAEA RVLRGSIGIG
LAAGEAAPVP DKGVLANVNV AKLDMPAWQA LVGDTASSAP EAAGGAERPE DAATGYLPTR
VAVRAQELGI AGRTLHNVVL GGTRDGALWR ANIDATELSG YAEYRHTQAG RLYARLARLK
IAPTEARQVE TLLDEQPGTL PALDIVIDDF ELLGKRLGRA EIDAVNRGGA GREWLLNKLS
FTMPEASFSA KGTWAAAPGG TPGRAEQRRT AMTFKLDIAD AGDLLTRFGM SGVLRRGSGR
LEGEVNWRGS PFSLDYPSLG GQLQVNVESG QFLKADPGLA KLLGVLSLQA LPRRLTLDFR
DVFSQGFAFD FIRGDAKIHN GIASTNNLQM KGVNAGALMD GSADIVRETQ DLRVVVVPEI
NAGTAALVAT AINPAIGLGT FLAQWVLSKP LAAAATQEFH IQGTWADPKI AKVPRSILPN
VPGAAAVPPG GQGK
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