Gene Vapar_5155 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_5155 
Symbol 
ID7971526 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp5471293 
End bp5471856 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content71% 
IMG OID644795749 
ProductOmpA/MotB domain protein 
Protein accessionYP_002947023 
Protein GI239818113 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.688009 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGGAAGC TTGTTGTTTC GGGTGCGGCT GCGGCCGCAT TGTTCGTTGC GGGGTGCGCC 
TCGCAATCGC CCGCGCCGGG ATCGGCCGCC GCGCCGGCCG CCCAGGCGGC TGCACCGGCC 
AACAGCTGGA CTGCGCGCCT GGCGGCGCTC AAGACCGAGC TGGAAAGTTC CACCAAGGGC 
ACGGGCGTGG TGATCGAGCA GACCGCGGAC AACCAGCTGC ATCTCGTGGT TCCCAATGAA 
CTGTCGTTCG ACGTGGGCCG CGCCAACGTC AAGCGCAACC TGGCGCAGGT GCTCGACAAG 
GTGGCCGAAG GCCTGCGCAG CGCGGCCGCG GCCAGCGTGC GCGTGGTGGG CCACACCGAC 
AACACCGGCA GCGAGGAAGG CAACGAGCGC CTCTCGGTGA GCCGCGCCGA CAGCGTGCGC 
AACCACCTGG TGAGCCGCGG CGTCTCGACC ACGGCCATCA CCACCGACGG CCGCGGCTCG 
CGCGAGCCGA TCGCCGACAA CGCCACGCCG GCCGGCCGGG CCCAGAACCG CCGCGTCGAG 
ATCTTCGTCG CGGAAAAGGT CTGA
 
Protein sequence
MRKLVVSGAA AAALFVAGCA SQSPAPGSAA APAAQAAAPA NSWTARLAAL KTELESSTKG 
TGVVIEQTAD NQLHLVVPNE LSFDVGRANV KRNLAQVLDK VAEGLRSAAA ASVRVVGHTD 
NTGSEEGNER LSVSRADSVR NHLVSRGVST TAITTDGRGS REPIADNATP AGRAQNRRVE 
IFVAEKV