| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5070 |
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| Symbol | |
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| ID | 7974189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5384066 |
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| End bp | 5385319 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644795664 |
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| Product | NHL repeat containing protein |
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| Protein accession | YP_002946938 |
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| Protein GI | 239818028 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2133] Glucose/sorbosone dehydrogenases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACCCC TCAACACCAT CCGCTCCTCG CTGGCCGCGA TCGCATCCGG ATGCGCGCTG
CTGCTGCCCG TGGCCGTCCA AGCACGCGGC TACACGCCGC AGGGCCTGTG CGGCGGCTAT
GCGCGGCTGG ACATCGGCAG CCCCGCGGGC ACCTGCGTCG CGCTGCTGGC CGACGAGGCC
CAGGGCCTGC GTGCGCCCCG GCGCATCCTC GAGGTGGCGC CGGGCCGCTA CTGGGTCGTC
GACATGGGCT CATGGGAGCC GCGCCGCGGC CGCCTGCTCG AGATGGTGCT GCCCACCGAG
GGCCCGGCGC CGCGGCGCGC GCGCTTCAGC GTGCTGGCCG AGCAGCTCGA CCGGCCGCTC
GGCCTTGCCG CCGGACCCGA CGGCAGGATC TACATCGGCG AGTCGGGCAC GATCTGGCGC
ACGCCCATCC CTTCTTCGCC CGGCGGCGCG CTGCAGCGCG AAACGGTGAT CGACGGCCTG
CCGGGCGACG GCACGCATCC GCTCAAGGAA CTGGCCTTCG GCCCGGACGG ACGGCTCTAC
GTCAACGTCG GCTCCGACTC CGATGCCTGC CGCGATGCTT CGTCGAAGCA ATACCCGCTG
CCCTGCCCCG ACCTGGCCGG ACCGAAGCCG CGCGCCGCGG TGTACGAGGC CGTGCTCGCC
GGGCCGGACC ACAAGCTGCA GAGCTTCAAG CCTTTTGCCA CCGGCCTGCG CAACTCGGTC
GCCTTGACCG TGCTGCCGGA CGGCCCCGCC AAGGGCGCCG TGCTGCAGGG CGAGAACTCC
ATCGACTACG AAGACGTGGG CCAACCGCCC GAAGAGCTGA ACCGGCTGCA GGCCGGGCGC
GACTACGGCT GGCCCTATTG CGTGGGCAAC CGCCAGCCCG CGCGCGGCTA CGAGAACCGG
CAGGGCTGCA AGGCCACCGA GGCGCCGCTG ATGCTCTGGC CCGCGCACGC CGCGCCGCTG
CAGATGATCA CCGGGCCCGC GGGCAGCCGC TTCGCGGGCC AGCTGCTGGT TGCCTGGCGC
GGCCACCAGC CGCCCGGCCA CCGCGTGGTG GGCTACAAGC TCGATGCGCG CGGCCTGCCG
TCGGGCAAGC CGGTCGAATG GCTCGCCGGC TGGAGCCCCA AGGCCGGCGT GCGCCCGATG
GGCCGGCCCG CCGGCATCAC CGTCGACCGG CAGGGCCGCC TGCTCGCCGT CGAAGACTTC
AACCGTACCA TCCTGATGCT GCTGCCGGAC ACCGGCGCCG CCCCCCAGAA ATGA
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| Protein sequence | MKPLNTIRSS LAAIASGCAL LLPVAVQARG YTPQGLCGGY ARLDIGSPAG TCVALLADEA
QGLRAPRRIL EVAPGRYWVV DMGSWEPRRG RLLEMVLPTE GPAPRRARFS VLAEQLDRPL
GLAAGPDGRI YIGESGTIWR TPIPSSPGGA LQRETVIDGL PGDGTHPLKE LAFGPDGRLY
VNVGSDSDAC RDASSKQYPL PCPDLAGPKP RAAVYEAVLA GPDHKLQSFK PFATGLRNSV
ALTVLPDGPA KGAVLQGENS IDYEDVGQPP EELNRLQAGR DYGWPYCVGN RQPARGYENR
QGCKATEAPL MLWPAHAAPL QMITGPAGSR FAGQLLVAWR GHQPPGHRVV GYKLDARGLP
SGKPVEWLAG WSPKAGVRPM GRPAGITVDR QGRLLAVEDF NRTILMLLPD TGAAPQK
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