Gene Vapar_5053 details

Gene Information

• Locus tag: Vapar_5053
• Symbol: rpsE
• ID: 7974172
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 5371265
• End bp: 5371783
• Gene Length: 519 bp
• Protein Length: 172 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 644795647
• Product: 30S ribosomal protein S5
• Protein accession: YP_002946921
• Protein GI: 239818011
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0098] Ribosomal protein S5
• TIGRFAM ID: [TIGR01021] ribosomal protein S5, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0106855
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAAGA TTCAAGCAAG AACGCAGAAC GAAGGCCCTG AAGACGGTTT GCGCGAGAAG 
ATGATCGCGA TCAACCGCGT CACCAAGGTG GTGAAGGGTG GTCGTATCCT CGGTTTCGCA 
GCACTCACCG TCGTGGGCGA CGGCGACGGC CGCGTCGGCA TGGGCAAGGG CAAGTCCAAG 
GAAGTGCCTG CTGCCGTGCA GAAGGCGATG GAAGAAGCCC GTCGCAACCT GGCCAAGATC 
TCGATCAAGA ACGGCACGCT GCATCACCGC GTGACGGGCC ATTGGGGCGC TGCCTCGGTG 
GTCATGATCC CGGCCCCGAA GGGTACCGGC ATCATCGCCG GCGGCCCGAT GCGCGCCGTG 
TTCGAAGTCA TGGGCATCAC CGACATCGTG GCCAAGAGCC ATGGTTCGTC GAACCCCTAC 
AACATGGTTC GCGCCACGCT CGACGGGTTG AAGAACTCGA CGACCGCGTC CGAAGTGGCT 
GCCAAGCGCG GCCTGACCGT CGAAGAAATC TTCGCCTGA 

 

Protein sequence

MAKIQARTQN EGPEDGLREK MIAINRVTKV VKGGRILGFA ALTVVGDGDG RVGMGKGKSK 
EVPAAVQKAM EEARRNLAKI SIKNGTLHHR VTGHWGAASV VMIPAPKGTG IIAGGPMRAV 
FEVMGITDIV AKSHGSSNPY NMVRATLDGL KNSTTASEVA AKRGLTVEEI FA