| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5043 |
|---|
| Symbol | |
|---|
| ID | 7974161 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 5365266 |
|---|
| End bp | 5365664 |
|---|
| Gene Length | 399 bp |
|---|
| Protein Length | 132 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644795636 |
|---|
| Product | Endoribonuclease L-PSP |
|---|
| Protein accession | YP_002946911 |
|---|
| Protein GI | 239818001 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0251] Putative translation initiation inhibitor, yjgF family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAACA AACTCTTGCA GCCCCCGGGC TGGTTGCCCC CCAAGGGCTA TGCGAATGGC
GTGGCCGCAC GCGGCACCAT GGTGTTCGTC GGCGGCCAGA TCGGCTGGAA TGCGCAGCAG
CAGTTCGAGT CGGACGACTT CATCGAGCAA TGCGGCCTGG CGCTGCGCAA CATCGCCGAG
GTGCTGCGCG AAGCCGGCGC CGGCCCCGAG CACATGGTGC GCATGACCTG GTACGTGACC
GACCGCGACG AATACAGCCG CCGCCTCGGC GAACTCGGCC CGGTGTATCG CGACGCGATG
GGGCGCAATT TCCCGGCCAT GACCTGCGTG CAGGTGGCGG CGCTGGTCGA GCACCGCGCC
AAGGTCGAGA TCGAGGTCAC GGCGGTCATT CCAGACTGA
|
|---|
| Protein sequence | MMNKLLQPPG WLPPKGYANG VAARGTMVFV GGQIGWNAQQ QFESDDFIEQ CGLALRNIAE
VLREAGAGPE HMVRMTWYVT DRDEYSRRLG ELGPVYRDAM GRNFPAMTCV QVAALVEHRA
KVEIEVTAVI PD
|
|---|
| |