| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5042 |
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| Symbol | |
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| ID | 7974160 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5363641 |
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| End bp | 5365269 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795635 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_002946910 |
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| Protein GI | 239818000 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0365] Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases |
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| TIGRFAM ID | [TIGR02262] benzoate-CoA ligase family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCAGCCC AAGTCGACCG CTTCGTTCAC GACCGCCTGC CGCCCGCCGA GCAGCTGCCG
GTCTTCCGCT ACGACCTTCC GGAGCTGCAG CTGCCCGATC AGCTGAACCT CGTGGAAGAG
CTCCTGGACA AGGCGCCCGC CAAGGGCTTC GGCGACAAGC CGATGCTGCG TTCGCCCGCC
GGGGCGCTGA CCTATTCGCA GGCCGCCGTC GAGGTCAACC GCATCGCGCA GGTGCTGGTC
GAAGACCTCG GCCTCGTGCC CGGCAACCGC GTGCTGCTGC GCGGCGGCAA CTCGGTAGCC
ATGGCCTTGT CATGGCTCGC AGTGGTCAAG GCCGGCCTGA TCGCGGTGGC CACCATGCCG
CTGCTGCGCG CCAAGGAACT GGGCGAGATC ATCGAGAAGG CGCGCCCCGT GGCGGCGCTG
TGCGACGGGC GCCTGCTCGA CGAGCTCGTG CTGGCGCAGC GGGAGCATCC CGTGCTCGCA
TCGGTGATCG CGTTCAACAA ACCCGATGCG CCCGATTCGC TGTCGGCACG CGCGGCCGGC
AAGAGCGGCG TGTTCACCGC CTGCCCCACG GCGTCGGACG ACATCGCCCT GCTCGCGTTC
ACCTCCGGCA CCACGGGCAA GCCCAAGGCG CCGGTCACCA CGCACCGCGA CGTGCTCGCG
ATGTGCCAAA CCTGGCCGCG CCACGTGCTG CGGGCGCGCA GCGACGACAT CGTGATCGGC
TCGCCGCCGC TGGCCTTCAC CTTCGGGCTC GGCGGCCTGC TGGTGTTCCC GATGTGGGCC
GGCGCCTCGG TGTACTTTGC CGATGCGCCC TTTACGCCCG AAGGTTTAGT GAAGCTCATC
AACGAGGTCG GCGCGACCAT CTGCTACACG GCCCCCACCT TCTATCGCCA GATGGCACCC
TTCGTGCGGC AGCACGGCGC GCCGAGCCTG CGCATCTGCG TGAGCGCGGG CGAGGCGCTG
CCCGACGCCA CGCGCCAGCT GTGGAAGGAA GCCACCGGCA TCGAGATGCT CGACGGCATC
GGCGGCACCG AGGTGTTCCA TATCTACATC TCGGCCGCGG GCGACCAGGT GCGCCGCGGC
GCGGTCGGCA AGGTGGTGCC CGGCTTCACC GCAAAGGTGG TGGACGACCA GGGCAACGAA
GTGCCGCGCG GCACGGTCGG CAAGCTGGCG CTGCAGGGGC CCGTGGGCTG CCGCTACCTG
GACGACCCGC GCCAGGCCGA CTACGTGAAG AACGGCTGGA ACTACCCCGG CGATTCGTTC
GTGCAGGACG ACGACGGCTA CTTCTTCTAC CAGGCGCGCG CCGACGACAT GATCATCACG
GCCGGCTACA ACGTCGGCGG GCCCGAGGTC GAGGATGCGC TGCTCAAGCA CCCGGCCGTG
GCCGAGTGCG GCGTGATCGG CAAGCCCGAT GCGGACCGCG GCATGATCGT GAAGGCCTTC
TGCGTGCTCA AGCCCGGCCA CGAAGGCGAC GCGGCGCTCG TCAAGGCGCT GCAGGACCAT
GTGAAGGCCA CCATCGCGCC CTTCAAATAC CCGCGGGAGA TCGAGTTCGT GCCGGTGCTG
CCGCGCACCG AGACCGGCAA GCTCCAGCGA TTCAAACTGA GACAACTCAA CGAGACCACC
CCATCATGA
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| Protein sequence | MSAQVDRFVH DRLPPAEQLP VFRYDLPELQ LPDQLNLVEE LLDKAPAKGF GDKPMLRSPA
GALTYSQAAV EVNRIAQVLV EDLGLVPGNR VLLRGGNSVA MALSWLAVVK AGLIAVATMP
LLRAKELGEI IEKARPVAAL CDGRLLDELV LAQREHPVLA SVIAFNKPDA PDSLSARAAG
KSGVFTACPT ASDDIALLAF TSGTTGKPKA PVTTHRDVLA MCQTWPRHVL RARSDDIVIG
SPPLAFTFGL GGLLVFPMWA GASVYFADAP FTPEGLVKLI NEVGATICYT APTFYRQMAP
FVRQHGAPSL RICVSAGEAL PDATRQLWKE ATGIEMLDGI GGTEVFHIYI SAAGDQVRRG
AVGKVVPGFT AKVVDDQGNE VPRGTVGKLA LQGPVGCRYL DDPRQADYVK NGWNYPGDSF
VQDDDGYFFY QARADDMIIT AGYNVGGPEV EDALLKHPAV AECGVIGKPD ADRGMIVKAF
CVLKPGHEGD AALVKALQDH VKATIAPFKY PREIEFVPVL PRTETGKLQR FKLRQLNETT
PS
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