| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5021 |
|---|
| Symbol | |
|---|
| ID | 7974139 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5339515 |
|---|
| End bp | 5340678 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644795614 |
|---|
| Product | ROK family protein |
|---|
| Protein accession | YP_002946889 |
|---|
| Protein GI | 239817979 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACCATCG GCGACCAGCA GCTGCTCAAG CGCATGAACC GCAGCGTGCT GCTGCGCCTC
CTGCGCGCCC GCCCGGGCCT GTCGCGCGCA CGGCTCGCGA GCGAGAGCGG CCTCACCAAG
TCGACCGTGA GCCTGCTGGT GCGCGAGCTG CTCGACGAGG GCTGGCTCAG CGAAGCCGGC
ACCACAGTCG CCGATGGGCT GGGACGGCCT TCCACGCCGC TGCGGATCAA CGTCGGCGTG
CGCGCGCTGA TGGGTGTCGA GATCGCGGTC GAGACGGTGC GCCTGGTGTG CGTCTCGCTG
CAGGGCGAGG TGCTGCATGC CGACACCCAG GCGCTGGCCG ACAGCGCGCC GGCCGGCGCC
TGCGCGCAGG TCGCGCGCAT GGCCGCGGCA GCGCATGGGC GGCTCAACGC ACTGGGGCTG
CGGCTGTCGA GCATCGGCGT CTGCGTGCCC GGCGCGGTGG ACGACTGCAC CGGGGTGGTC
CGCTTTGCGC CCAACCTCGG CTGGCGCAAC GTGAGCCTGC TGCCCGCGCT GGAAGAAGCC
TTTGCCGCGG CCGGGCTGCC GGGCGTCACG GTGCAGCTGC AGAACGACGC CGATGCCGCC
GCGCTCGGCG AGTACGAGTT CTCCGGTGGC GAGAGCGCGG ACCCGCTGAT CTTCGTGAGC
TGCGACGTGG GCGTGGGCGC CGGCGTGGTG CTGAACGACC GGCTCTTCAC GGGCGCGCAA
GGCATGGCGG GCGAGATCGG CCACACCATC CTGCAGCTCG ATGGGCCGCT GTGCTCGTGC
GGGCGCCGCG GCTGCGCCGA GGCCTTCTTC GGCTCGCGCG CGCTCGCGCG CGAAGCGCCC
GGCATGGCGC ACGCGGCAGC CTTCTTCGGC GTGCTGCTGC AGAACCTGTG GGTCACCTTC
GATCCGCGCG CCATCGTGCT CGGCGGCAAG TCCTGCACCG GCCATCTCGG GCTGGCGCAG
GCGGCCTTCG AGTGGGTCGG GCGCCATGCC GATGCGGCCG GCATGCCCGC ACCCGACCTG
CGCATCGCGC GCTACCTTGC GCTGGCACCC GCCGTGGGTG CGGCGGCGCT GGCGCTGCAC
GAATACCTCA GGCCGCTGCA GCCCGATGCG CGCACGCGCC GGGCCCGCGC CGCGCGCAAC
GAAGACCGAA TACCTTCTGT TTAA
|
|---|
| Protein sequence | MTIGDQQLLK RMNRSVLLRL LRARPGLSRA RLASESGLTK STVSLLVREL LDEGWLSEAG
TTVADGLGRP STPLRINVGV RALMGVEIAV ETVRLVCVSL QGEVLHADTQ ALADSAPAGA
CAQVARMAAA AHGRLNALGL RLSSIGVCVP GAVDDCTGVV RFAPNLGWRN VSLLPALEEA
FAAAGLPGVT VQLQNDADAA ALGEYEFSGG ESADPLIFVS CDVGVGAGVV LNDRLFTGAQ
GMAGEIGHTI LQLDGPLCSC GRRGCAEAFF GSRALAREAP GMAHAAAFFG VLLQNLWVTF
DPRAIVLGGK SCTGHLGLAQ AAFEWVGRHA DAAGMPAPDL RIARYLALAP AVGAAALALH
EYLRPLQPDA RTRRARAARN EDRIPSV
|
|---|
| |