| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5017 |
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| Symbol | |
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| ID | 7974135 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5332409 |
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| End bp | 5333389 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795610 |
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| Product | transcriptional regulator, LuxR family |
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| Protein accession | YP_002946885 |
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| Protein GI | 239817975 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.177387 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCGGC CTGCCGCCCT GCACGACTTC AGCGAGCTGC TGCTGCGGCT CTACCGGCTC
TCGCACGAGC TGCCGATCGA TGCCTTCCAG GATGCCGCGC TCGATCTCAT CAAGCCGGTG
CTGGCCTTCG ACTCGTCGAT GTGGGGCACC GCCACCCGCA CCGACAGCGG CATCGACATC
CACACCATCC ACCTGCACAA CCAGCCAGCG GAAATGCTGG CGGCCTATGA AGAGGTGAAG
CACCTCGACA CCGCCGCGGT GGAAGTGGGC AAGCGGCCGA AGTCGACGCT CTCGTTCAAT
GCCAATGCCT GGTTCCACCG CAAGGACCAG GCGCAGCTGC GCGCATATGG CGAGCGCTTC
GAGCAGTCCA ACTTCTTCAT CAGCTCGGAC GTGCACCCGC AGACGAATTT CGTGCACTGG
CTCAGCCTGT TCCGCTCGGA CCCCGATGCG CACGGCACCG AAGACGAACG GCAGCTGCTC
GCGAGCCTCG CGCCGCACGT GATGCAGGCG CTGGCGCTCA ACCGCATCGT GCACCTCGAC
CGGCTCGAGG CCGGCGGCCA GGCGCCCGGC GGCTCCGCCA TCGGCGACCT GCGCGGCGTG
CTCTATCACG CCGACGGCCC CTTCGAGGCG ACGATGAAGG CCGAGTGGCC GTCCTGGCAC
GGGCGGACCC TGCCCGATGC GCTGCTCGCG CACTTCCTCG GCGGCCATGC GCGCTACAGC
GGCCGGGCGG TCGTGGTCAC GCACCACGTG GAGCAGGGCC TGCTGTTCCT CAAGAGCCGC
ATGCGCTGCC TGGCCGACAG CCTGACGCCG CGCGAGCACA CCGTTGCCGA GCTGCTGGCC
CGGGGCGACA CGCACAAGGA CATTGCGGCC ATGCTGAACC GCTCGCCCGC CACCGTGCGA
AACCACATCC AGTCGATCTA CGACAAGCTG CAGGTGGGCA ACGTGGCGGG CCTGATCCAG
GAGCTGCGGC TCGCGGGCTG A
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| Protein sequence | MTRPAALHDF SELLLRLYRL SHELPIDAFQ DAALDLIKPV LAFDSSMWGT ATRTDSGIDI
HTIHLHNQPA EMLAAYEEVK HLDTAAVEVG KRPKSTLSFN ANAWFHRKDQ AQLRAYGERF
EQSNFFISSD VHPQTNFVHW LSLFRSDPDA HGTEDERQLL ASLAPHVMQA LALNRIVHLD
RLEAGGQAPG GSAIGDLRGV LYHADGPFEA TMKAEWPSWH GRTLPDALLA HFLGGHARYS
GRAVVVTHHV EQGLLFLKSR MRCLADSLTP REHTVAELLA RGDTHKDIAA MLNRSPATVR
NHIQSIYDKL QVGNVAGLIQ ELRLAG
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