Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_5010 |
Symbol | |
ID | 7974128 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 5323323 |
End bp | 5324654 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644795604 |
Product | hypothetical protein |
Protein accession | YP_002946879 |
Protein GI | 239817969 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACTGA AATCGCTCGC TCTGACCGCC GCCCTGGTGG CCAGCACCCT CGGCGCGCTG CTTGCGCCAT CGCTCGCCCA GGCGCAGGCC AAGGAACAGT TCTTTCCGCT GCTGGTGTAC CGCACCGGCC CCTATGCGCC CAACGGCACG CCCTGGGCCA ATGGCAAGCA GGACTACATC AAGTACATCA ACGCCACCGG CGGCATCAAC GGCGTGAAGA TCACGTACGA AGAGTGCGAG ACCGGCTACG CCACCGACAA GGGCGTGGAG TGCTACGAAC GCCTGAAGGG CCGCCCCGGC GTGACGCTGT TCGACCCGCA GGCCACCGGC ATCACCTTTG CGCTGACCGA CAAGGTGCCC ACCGACAAGA TCCCGCTCAT CACGCTGGGC TACGGGCTGT CGGCGTCGCA GGACGGCAGC GTGTTCAAGT GGAACTTCCC GCTGATGGGC AGCTACTGGA CCGCGGCCGA CATCCTGATC CAGCACATCG GCAAGAAGGA AGGCGGCATG GACAAGCTCA AGGGCAAGAA GATCGCCCTC GTGTACCACG ACTCGCCGTT CGGCAAGGAG CCGATCCCGC TGCTGCAGGA GCGCGCCAAG CAGAACGGCT TCGAGCTGTC GCTGATTCCG GTCACCGCAC CCGGCGTGGA GCAGAAGTCC GCCTGGCTGC AGGTGCGCCA GTCGCGGCCC GACTACGTGC TCTTGTGGGG CTGGGGCGTG ATGAACTCCA CCGCGCTGAA GGAGGCCGTG GCCACCGGCT ACCCACGCGA GAAGATGTAT GGCGTGTGGT GGGCCGGCGC CGAGCCTGAC GTGAAGGACG TGGGCGCCAA CGCCAAGGGC TACAACGCGC TGGCGCTCAA CACCTCGGGC ACCGAGCCGA AGGTGATCCA GGAAATCCTC AAGCAGGTCC ACGACAAGGG CCAGGGCACG GGGCCGAAGG ACGAAGTGGG CTCGGTGCTC TACACCCGCG GCGTGATCAT CCAGATGCTG GGCGTCGAAG CCGTGAAGCG CGCGCAGGAG CGCTTCGGCA AGGGCAAGGT CATGACCGGC GAGCAGGTGC GCTGGGGCAT GGAGAACCTC GCGCTCGACC AGAAGAAGCT CGATTCGCTG GGCTTCTCGG GCGTACTGCG CCCGCTCGGC ACCTCGTGCC AGGACCACAT GGGCTCGACC TGGGCCCGCG TGCACACCTG GGACGGCGCC AAGTGGGGCG GCATGTCCGA CTGGTACCAG GCCGACGAGC AGATCATCAA GCCGATGGTG AAGGTGGCGG CCGAGAAGTA CGCGGGCGAA AAGAAGCTCA CGCGCCGCGA CGCAGCCGAT TGCAGCATGT GA
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Protein sequence | MKLKSLALTA ALVASTLGAL LAPSLAQAQA KEQFFPLLVY RTGPYAPNGT PWANGKQDYI KYINATGGIN GVKITYEECE TGYATDKGVE CYERLKGRPG VTLFDPQATG ITFALTDKVP TDKIPLITLG YGLSASQDGS VFKWNFPLMG SYWTAADILI QHIGKKEGGM DKLKGKKIAL VYHDSPFGKE PIPLLQERAK QNGFELSLIP VTAPGVEQKS AWLQVRQSRP DYVLLWGWGV MNSTALKEAV ATGYPREKMY GVWWAGAEPD VKDVGANAKG YNALALNTSG TEPKVIQEIL KQVHDKGQGT GPKDEVGSVL YTRGVIIQML GVEAVKRAQE RFGKGKVMTG EQVRWGMENL ALDQKKLDSL GFSGVLRPLG TSCQDHMGST WARVHTWDGA KWGGMSDWYQ ADEQIIKPMV KVAAEKYAGE KKLTRRDAAD CSM
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