| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5001 |
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| Symbol | |
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| ID | 7974283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5314932 |
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| End bp | 5315984 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795595 |
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| Product | beta-lactamase domain protein |
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| Protein accession | YP_002946870 |
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| Protein GI | 239817960 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0521507 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGCAC AGCGCAAGAG TTCGAAGAAC AACACCCTCC TGCTGAAGGC CACCACCCTG
GCAGCGGTGG CCGCCCTGGT GCAGGGCTGC GCGCAGACGC CGGCCGGCAC CACCGCAGGG
CTGCCCGCCG CGCCGTCCGA GGCCAGCGTG GCGGCCCATG TGGCGACCGC CACGCGCGCA
GCCGGCACCG ACCTCAAGGC CCTGCTGACC CTGTGCCAGC CCGCGCCTGC CGCCCGGCCG
CCGCAGGACG CGCTCGACAG GAGCCTCACG GGCTTCATCA ACCGGCCCGC GCCGCCGCCG
GGCCAGGCCT TCGACAACCT GTACTTCGTG GGTGCCGACT GGGTCAGCGC CTGGGCGATC
AAGACCTCGC AGGGCATCAT CCTGATCGAC GCACTCAACA CCCAGGCCGA GGCCGCGGCG
CTGATCGAAG GCGGCATGCG CAGGCTGGGG CTCGACCCGG CGCAGATCAA GTACGTGATC
GTGACGCATG GCCACGGCGA CCACTACGGC GGCGCCAGCT ACCTCGCGCA GAAGTACCGC
GCACGCGTGG TGATGAGCGA GGCCGACTGG ACCATGACCG AGACCAGGCT CGAATTTGCG
ACGCCGATCT GGGGCGCGCC GCCCAAGCGC GACATCTCGG TGAAGGACGG CGACCGCATC
ACGCTCGGCG ACACCAGCGT CACGCTGTAC CTCACGCCGG GCCACACCAT GGGCACGATC
TCTCCGGTGT TCGACGTGAG CGCGGGCGGG CGCAAGCACC GCGCAATGCT CTGGGGCGGC
ACCGGCTTCA ACTTCGGCAA GGACGTGCCG CGGCTGGACG CCTACATCGG CGCCACGCAG
CGCATGGGTG CGATCGCGCA GAGCCAGCGC ATCGACGTGA TGCTGTCGAA CCATTCGAAC
ATCGACGGCT CGCAGGCCAA GCTCGCCGCC CTGCGGCAGC AGCCTGCGCC GGCGGCGAAC
CCGTTCGTGC TCGGCACACC GACGGTGGAG CGTGCGCTGG CCGTGATGGG CGAGTGCGCG
CAGGCGCAGC GCGACAGGTT CGCGATGCTG TAG
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| Protein sequence | MAAQRKSSKN NTLLLKATTL AAVAALVQGC AQTPAGTTAG LPAAPSEASV AAHVATATRA
AGTDLKALLT LCQPAPAARP PQDALDRSLT GFINRPAPPP GQAFDNLYFV GADWVSAWAI
KTSQGIILID ALNTQAEAAA LIEGGMRRLG LDPAQIKYVI VTHGHGDHYG GASYLAQKYR
ARVVMSEADW TMTETRLEFA TPIWGAPPKR DISVKDGDRI TLGDTSVTLY LTPGHTMGTI
SPVFDVSAGG RKHRAMLWGG TGFNFGKDVP RLDAYIGATQ RMGAIAQSQR IDVMLSNHSN
IDGSQAKLAA LRQQPAPAAN PFVLGTPTVE RALAVMGECA QAQRDRFAML
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