| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4992 |
|---|
| Symbol | |
|---|
| ID | 7974274 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 5305698 |
|---|
| End bp | 5307071 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644795586 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002946861 |
|---|
| Protein GI | 239817951 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.942252 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATGG CCTCTCTCTT CAGCCCGGCA CGCGCCGCCG GCAAGCGCCA GGGCCTGGCG
CTCATCACGC TGTGCCTTGC CGTGCTGGTC GCACAGATCG ACATGGCGGT GGTCAACCTC
GGCACACGCC CCATCGGCGA ATATTTCTCC GCAAGCGTCA TCGCGCTGCA GTGGGTGCTC
GACAGCTACA ACCTGGTCTA TGCGGTGCTG CTGCTCACCG GCGGCCTGCT GGCCGACCTC
TATGGCCGGC GCCGCATCTT CATGGTGGGC GCGGCGGTCT TCACGGGCGC ATCCCTGCTG
TGCGCCATGG CGACTTCGGT CTGGCTGCTG ATCGCCGGGC GGGCGCTCGC GGGCCTGGGT
GCGGCGCTGC TGATGCCCGC ATCGCTCGCG ATCATCCGTG TGACCTGGCA GGACAGCGCG
GAGCGCGGCC GGGCGCTCGG TATCTGGGCG GCATGCAACG GGCTCGCGAT GGCCATCGGC
GCACCGCTGG GCGGCGTGCT GATCCGCCAC TTCGGCTGGC GCAGCATCTT TCTTGCGGTG
ATTCCGCTGG GCCTTGCCGC GCTGGCGCTG GCGCTGCCGT CCATTGCCGA GTCGTCGGAC
CCCGAGGACC GCAGCTTCGA CGCCATGGCC CAGGCCTTCG GCGCCCTGGC GCTCGGCGGC
CTGGCCTTTG CTGCCATCCA GTCGCACGAT GCGCCGCGGC TCGCCGCCGC CGCGTGGGTG
GCGGCCGCGG CCGCCTTCGT GCTGTTCGTG CGCATCGAGC GCGGCAAGGG CGCCGCCGCG
CTGGTGCCGC TCGACATCTT CGGCGTGCCG GCGTTCCGCG GCGCGATGGC CGCCACCATC
GGCATGACCT TCGGCATGTA CGGCGCGCTG TTCCTGCTGC CGTTGACCTG GCAGGGCACC
GGCATGCTCG ATGCCGCGCA CGCCGGCCTC GCGCTGATTC CGATGTCGCT GGTGTTCGTG
GCGGTCTCTC CGTTCAGCGG CCGGCTGGCC GGGTGGCTCG GGCCGCGCGC CCTGACCTGC
GGCGGCGTGG CGGTGATCGG CTGCGGGCTG TTGCTGATCG GCCTGGGCGC GCACCGCGCC
TCCATCGTGC CGGCCGAGCT CGGGCTGATG CTCACCGGGC TGGGCATGGG CCTGGCGACC
GGGCCGCTGA TGGGCGAAGC CGTCGGCGCC GTGGATGCGG CGCGCTCGGG CACGGCCGCT
TCGCTCATCA ACGTTGCGCG CATCGCGGGG GCGACGCTCG GCGTGGCGGT GCTCGGCGCG
GTGTACGCCG CGGCGCACGG CGGCCCCGGC GGGTTGCGCC TGGCGATGTT CTGCGGCGCG
GCGATGCAGA TCGGCTGCGC GGCCTTCGCC TGGCACACGG CTCGCCCGCG TTGA
|
|---|
| Protein sequence | MNMASLFSPA RAAGKRQGLA LITLCLAVLV AQIDMAVVNL GTRPIGEYFS ASVIALQWVL
DSYNLVYAVL LLTGGLLADL YGRRRIFMVG AAVFTGASLL CAMATSVWLL IAGRALAGLG
AALLMPASLA IIRVTWQDSA ERGRALGIWA ACNGLAMAIG APLGGVLIRH FGWRSIFLAV
IPLGLAALAL ALPSIAESSD PEDRSFDAMA QAFGALALGG LAFAAIQSHD APRLAAAAWV
AAAAAFVLFV RIERGKGAAA LVPLDIFGVP AFRGAMAATI GMTFGMYGAL FLLPLTWQGT
GMLDAAHAGL ALIPMSLVFV AVSPFSGRLA GWLGPRALTC GGVAVIGCGL LLIGLGAHRA
SIVPAELGLM LTGLGMGLAT GPLMGEAVGA VDAARSGTAA SLINVARIAG ATLGVAVLGA
VYAAAHGGPG GLRLAMFCGA AMQIGCAAFA WHTARPR
|
|---|
| |