| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4989 |
|---|
| Symbol | |
|---|
| ID | 7974271 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 5300831 |
|---|
| End bp | 5301961 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644795583 |
|---|
| Product | Alcohol dehydrogenase GroES domain protein |
|---|
| Protein accession | YP_002946858 |
|---|
| Protein GI | 239817948 |
|---|
| COG category | [C] Energy production and conversion
[R] General function prediction only |
|---|
| COG ID | [COG0604] NADPH:quinone reductase and related Zn-dependent oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.185797 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTGC AACTGCGCTC CCTCGTCCGC GCGAACGGCG AACTCGAACT CTCGCTGCAC
GACGAGCCGA TTCCCGAACC CCAGGCACAC GAAGTCGTGA TCCGCATCGA GGCCTCGCCG
ATGAATCCGT CGGACCTGGG CCTGCTGTTC GGCGCGGCCG ACATGGGCAC CGCCAAGGTT
TCCGGCACGC CCGAACGGCC GATCGTGACG GCCACCGTGC CCGAGCGCGC CATGCCGGCG
ATGGCCGGGC GGCTGGACCA ATCGATGCCG GTCGGCAACG AAGGCGCCGG CGTGGTGGTG
AAGGCCGGCG CGTCCGCGGC GGCGCAGGCG CTGCTGGGCA AGACGGTGGC CGCGATCGGC
GGCGCGATGT ATTCGCAGTA CCGCGCGGTG GCCGCGGCCC AGTGCCTGGA GCTGCCCGCG
GGCACGGCGC CGGCCGAAGG CGCCTCGTGC TTCGTGAACC CGCTCACTTC GCTCGGCATG
GTCGAGACGA TGCGGCGCGA AGGCCACAAG GCGCTGGTGC ACACGGCCGC CGCATCCAAC
CTGGGCCAGA TGCTCAACAA GATCTGCCAG AAGGACGGCA TCGCGCTGGT CAACATCGTG
CGCAAGCCCG AGCAGGAGGC GCTGCTGCGC GGCATCGGCG CCAGGTACGT ATGCAACGCG
AGCTCGCCCA CTTTTCTCGA AGACCTGACG CAGGCGCTGG TCGAGACCGG CGCCACGCTG
GCCTTCGACG CCACGGGCGG CGGCAAGCTC GCGGGACAGA TCCTCGGCTG CATGGAAGCG
GCGCTCAACC GCACCGCCAA GGAATACAGC CGCTACGGCT CGACCACGCA CAAGCAGGTC
TACATCTATG GCGGCCTGGA CCGCTCGCCA ACGGAGTTCG TGCGCAACTT CGGCATGGCG
TGGGGCATGG GCGGGTGGCT GCTGTTTCCG TTCCTGCAGA AGCTCGGGGA TGAAGGCGTG
CAGCGGCTGA AGGCGCGCGT GGTGGCCGAG TTGAAGACCA CGTTTGCGAG CCATTACACG
CGGGAGGTTT CGTTGCTCGA GGCGCTGCAG CTCGATGCGA TTGGCGTGTA TGGGAAGCAG
GCGACGGGGG AGAAGTTCTT GTTGAATCCG AACAAGGGTG TGGCGGCTTG A
|
|---|
| Protein sequence | MALQLRSLVR ANGELELSLH DEPIPEPQAH EVVIRIEASP MNPSDLGLLF GAADMGTAKV
SGTPERPIVT ATVPERAMPA MAGRLDQSMP VGNEGAGVVV KAGASAAAQA LLGKTVAAIG
GAMYSQYRAV AAAQCLELPA GTAPAEGASC FVNPLTSLGM VETMRREGHK ALVHTAAASN
LGQMLNKICQ KDGIALVNIV RKPEQEALLR GIGARYVCNA SSPTFLEDLT QALVETGATL
AFDATGGGKL AGQILGCMEA ALNRTAKEYS RYGSTTHKQV YIYGGLDRSP TEFVRNFGMA
WGMGGWLLFP FLQKLGDEGV QRLKARVVAE LKTTFASHYT REVSLLEALQ LDAIGVYGKQ
ATGEKFLLNP NKGVAA
|
|---|
| |