| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4985 |
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| Symbol | |
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| ID | 7974267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5297560 |
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| End bp | 5298381 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795580 |
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| Product | RNA-binding S4 domain protein |
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| Protein accession | YP_002946855 |
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| Protein GI | 239817945 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.33907 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGACG CCCCCGCCCC GATCCGCCTC AACAAACGCA TGGCCGAACT CGGCCTCTGC
TCGCGCCGCG AGGCCGACGA ATGGATCGCC AACGGCTGGG TGAAGGTGAA CGGCAAGCCG
GCCGAAATGG GCGTGAAGGT CACGCCGTCC GACCGCATCG AGGTCGACAA GGCCGCCAAG
GGCCAGCAGG CGAACCAGGT CACCATCCTG ATCAACAAGC CCATCGGCTA CGTGAGCGGC
CAGGCCGAAG ACGGCCACGA GCCCGCGGTG ACGCTCTTCA CGCCGCAGAA CCGCTGGGCC
GAGGACAACG CGCGCTTCTT CTTCAGCCCG CAGCAGCTGC GCGGCCTGGC GCCTTGCGGG
CGGCTCGACA TCGATTCGAT CGGCCTGCTG GTGATGACGC AGGACGGGCG CATCGCGCGC
CAGCTGATCG GCGAAGACTC GGTGATGGAG AAGGAGTACC TGGTGCGCGT GGCCTACCAC
GGCCTGGGCC AGCCCGCGCC CACCGGGCAG CTGGTGCGCA TGGACGACGA CGACCCCGTC
ACCACCAACG TGCAGGCGGT GTTTCCGCCC GCAATGCTGG CCAGGCTGCG CCACGGCCTG
AGCCTCGATG GCCAGCCGCT CAAGCCGGCG CGGGTCGAAT GGCAGAACCC CGAGCAATTG
CGCTTCGTGC TCACCGAGGG CAAGAAGCGG CAGATCCGCC GCATGTGCGA GCTGGTCGGC
CTGAAGGTGG TGGGCCTGAA GCGCGTGCGC ATCGGCAAGG TGATGCTTGG CAACCTGCCC
GTGGGGCAGT GGCGCTACCT CGGTCCGCAC GAGAAGTTCT GA
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| Protein sequence | MTDAPAPIRL NKRMAELGLC SRREADEWIA NGWVKVNGKP AEMGVKVTPS DRIEVDKAAK
GQQANQVTIL INKPIGYVSG QAEDGHEPAV TLFTPQNRWA EDNARFFFSP QQLRGLAPCG
RLDIDSIGLL VMTQDGRIAR QLIGEDSVME KEYLVRVAYH GLGQPAPTGQ LVRMDDDDPV
TTNVQAVFPP AMLARLRHGL SLDGQPLKPA RVEWQNPEQL RFVLTEGKKR QIRRMCELVG
LKVVGLKRVR IGKVMLGNLP VGQWRYLGPH EKF
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