| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4963 |
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| Symbol | |
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| ID | 7974245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5274713 |
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| End bp | 5275603 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795558 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002946833 |
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| Protein GI | 239817923 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.463042 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCGTT TCAAGGCCAT GCAGACCTTC GTGCAGATTG CCGACCAGGG CAGCCTGACC
CGCGCCGCCG AGGCGCTCGG CAGTTCGCTG CCCGCGGTGG TGCGCGCGCT CGCCGCGCTC
GAGGCCCACC TGGGCGTGCG CCTGTTCCAC CGCACCACGC GCCGCCTCTC GCTCACCGAG
GAAGGCCGCC ACTACCTGCC GAGCGCGCGC GAGGTGCTGC TGGCGGCCGA TGCCGCCGAC
CTCGCGCTCA AGGCCGAGGC GCGCGAGCCC GCGGGCCAGC TCACCATCAC CGCGCCGGTG
CTGTTCGGCC ACATGTACGT GGCGCCCGCC ATCACGCGCT TCATGCAGCG CCACGACAAG
GTGCGCTGCA CCGTGCTGCT GCACGACCGC ACGGTGAACC TGCTGGAGGA AGGCATCGAC
GTGGGCATCC GCATCAGCCC GCTCGCGGAT TCGTCGCTCG TGGCGCAGAC GCTCGGTACC
ATCCGGCGCG TGGTGGCGGT GAGCCCCGAC TACCTCGCGC GCCACGGCAC GCCGCGCCAT
CCGCGCGACC TCCATGGCGC ACCCTGCGTG CGCGGCCGCG TCGACGCGCC GCCGCAGTGG
GTGTTTCACG AACGCGGCAA GACCATCAGC GTGACGCCGA GCTGCCGCCT CGAGTTCAAC
CACCTCGCGC CGGCCATCGA AGCCTGCGCC GCGGGCATGG GCTTCGGCAC CTTCTTCTCC
TACCAGGTGC TGCCGCATGT GGCGCAGGGA CGGTTGAAGC TGGTGCTGGA AGACTTCGAG
CCGCCGCCGC GGCCGGTGAG CGTGATCTAC CCGAACGCGC GGCTGCTGCC GGCCCGCACG
CGCGCCTTCA TCGACTGGAT GAAGACGGAG TTCAGCGGCC TCCACATGTA G
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| Protein sequence | MDRFKAMQTF VQIADQGSLT RAAEALGSSL PAVVRALAAL EAHLGVRLFH RTTRRLSLTE
EGRHYLPSAR EVLLAADAAD LALKAEAREP AGQLTITAPV LFGHMYVAPA ITRFMQRHDK
VRCTVLLHDR TVNLLEEGID VGIRISPLAD SSLVAQTLGT IRRVVAVSPD YLARHGTPRH
PRDLHGAPCV RGRVDAPPQW VFHERGKTIS VTPSCRLEFN HLAPAIEACA AGMGFGTFFS
YQVLPHVAQG RLKLVLEDFE PPPRPVSVIY PNARLLPART RAFIDWMKTE FSGLHM
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