| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4950 |
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| Symbol | |
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| ID | 7974232 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5257885 |
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| End bp | 5258994 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644795545 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_002946820 |
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| Protein GI | 239817910 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGACA GCAAATCGCC CCGCCGCCGC AGCCTGCTCA AGGGCGCGGC CGTGGCCGCC
GGCGCCATGT CGGCGCCGAT GGTCAGCATG GCCCAGACCA CCTCGCTGCG CTTCCAGAGC
ACCTGGCCAG CCAAGGACAT CTTCCACGAA TATGCGCAGG ACTTCGCGAA GAAGGTCAAT
GACATGGCGG GCGGCCGCCT GAAGATCGAG GTGCTGCCCT CGGGCGCGGT GGTGCCGGCC
TTTCAGCTGC TCGAAGCGGT GAACAAGGGC ACGCTGGACG GCGGCCATGG CGTGGTCGCC
TACCACTACG GCAAGAACTC GGCGCTCGCG CTGTGGGGTT CGGGACCGGG CTTCGGCATG
GATGCCAACA CGGTGCTGGC CTGGCACAAC TACGGCGGCG GCAAGGCGCT GCTCGACGAG
ATCTACAAGA GCCTGAACAT GGAGGTGGTG TCGTACCTCT ACGGCCCCAT GCCCACGCAG
CCGCTGGGCT GGTTCAAGAA GCCGGTGGCC AAGGTGGAGG ACATGAAGGG CCTCAAGTTC
CGCACCGTGG GGCTCGCGGT GGACATGTTC ACCGAGATGG GCACGGCGGT GAACCCGCTG
CCCGGCAGCG AGATCGTGCC CGCGCTGGAC CGCGGGCTGA TCGATGCGGC CGAGTTCAAC
AACGCGTCGA GTGACCGCGT GCTCGGCTTT CCCGACGTGG TGAAGAACTG CATGCTGCAG
AGCTTCCACC AGTCGGGCGA GCAGTTCGAG GTGCTGTTCA ACAAGGGCAA GTACAGCGCG
CTGCCGCAGG AGCTGCGCTC CATCATCGAC TACGCCGTGC AGGCCGCGAG CGCCGACATG
AGCTGGAAGG CCGTGCAGCG CAACTCGCAG GACTATGCCG ACATGAAGAA GGCCGGCATC
AAGTTCTACA AGACGCCCGA TGCGGTGCTG CGCGCGCAGC TCGCGGCATG GGACAAGACC
ATCGAGAAGA AAGCCGCGGA GAACCCGTTG TTCAAGAAGG TGCTTGATTC GCAGCGCATC
TTCGCCGAAC GCGCGCTGCA ATGGCAGAAC GACTACGGGG TGGACTTCAA GATGGCCTAC
GCGCACTACT TCGGCAAGAA GAAGAGCTGA
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| Protein sequence | MTDSKSPRRR SLLKGAAVAA GAMSAPMVSM AQTTSLRFQS TWPAKDIFHE YAQDFAKKVN
DMAGGRLKIE VLPSGAVVPA FQLLEAVNKG TLDGGHGVVA YHYGKNSALA LWGSGPGFGM
DANTVLAWHN YGGGKALLDE IYKSLNMEVV SYLYGPMPTQ PLGWFKKPVA KVEDMKGLKF
RTVGLAVDMF TEMGTAVNPL PGSEIVPALD RGLIDAAEFN NASSDRVLGF PDVVKNCMLQ
SFHQSGEQFE VLFNKGKYSA LPQELRSIID YAVQAASADM SWKAVQRNSQ DYADMKKAGI
KFYKTPDAVL RAQLAAWDKT IEKKAAENPL FKKVLDSQRI FAERALQWQN DYGVDFKMAY
AHYFGKKKS
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