Gene Vapar_4898 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4898 
Symbol 
ID7971592 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp5213536 
End bp5213991 
Gene Length456 bp 
Protein Length151 aa 
Translation table11 
GC content67% 
IMG OID644795493 
ProductPTS system fructose subfamily IIA component 
Protein accessionYP_002946768 
Protein GI239817858 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2893] Phosphotransferase system, mannose/fructose-specific component IIA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAGCA TCCTCATCAT CGCCCACTCA CCGTTCGCGC AGGCGCTGCG GCGGTGCGCG 
CTGCATGTGT TCCCCGATTG CGAACAGGCC ATCGTCGCAC TCGACGTGCT GCCCAATGTG 
TCGCCCGAAG AAACGCTGGC GGCAGCCCGC ATCACGCTCG AGCAGCAGCT CAATGCACCG 
CGCTCGCAGG TGCTGGTGCT GGCCGACGTG TTCGGCGCGA CGCCCTGCAA CGTGGCGCAG 
AAGCTGGTGG ACGGCGTCCG CTCGCGGCTG GTGGCGGGCG TCAACCTGCC GATGCTGCTG 
CGCGCGGTGA CCTACCGCCA CGAGCCGCTC GAGACGCTGG TGCAGCGCGC CATCGCGGGC 
GGCACCGCGG GCGTCATGCA GGTGGCGGTG GCGGCACCCC AGAACCAGGC GAAGAGAAAG 
CACAGTGATC AAGAAATCCG TGACCATCAG CAATAA
 
Protein sequence
MNSILIIAHS PFAQALRRCA LHVFPDCEQA IVALDVLPNV SPEETLAAAR ITLEQQLNAP 
RSQVLVLADV FGATPCNVAQ KLVDGVRSRL VAGVNLPMLL RAVTYRHEPL ETLVQRAIAG 
GTAGVMQVAV AAPQNQAKRK HSDQEIRDHQ Q