Gene Vapar_4886 details

Gene Information

• Locus tag: Vapar_4886
• ID: 7971580
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 5204176
• End bp: 5204889
• Gene Length: 714 bp
• Protein Length: 237 aa
• Translation table: 11
• GC content: 75%
• IMG OID: 644795481
• Product: transcriptional regulator, AraC family
• Protein accession: YP_002946756
• Protein GI: 239817846
• COG category: [K] Transcription
• COG ID: [COG2207] AraC-type DNA-binding domain-containing proteins

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCACCAGC CCGCCCCGCC CATCCTTTCG CTGCGCCACT ACGGCAGCTC GCGCGGCAGC 
CATGCGCACG ACCACTTCCA GGTGCTGGTC GGCCTGGAAG GCGTGCTGGA GATCGAGATC 
GAAGGCCGCG GCGGCGGCAT CGGCGCCGGC CAGGCGCAGG TGGTCGCGCC CGGCGACCGG 
CACGACTTCG AAGCACGCGG CAGCGGCGGC AGCAGTTGCC TCGTGCTCGA CACCGCGCAT 
GCGCCGTGGG CCCGGTGTGC CGGACGCGCG CCGGCCGACC CGCTTCAGCT GCATGCGCTG 
GCGCGCTATC TCGCGCACTG CACGGCGCAG CCACGGCAGT TCGCGCTCGC GCTGCAGCAC 
GGCCCCGCGC TGCTGCTGGA AGCCTGGAGC CCCGCGCCTT CTTCTTCAAT GCCGCACACG 
CGCCGCCGCC GGATCGACTG GCCGGCGCTC GCGGCCTGGG CCCGGGCGCG GTGGCACGAG 
CCGCTCACGG TCGCCGACCT GGCCGAAGTC GCCTGCCTGA GCCCCAGCCA GCTCGCGCAG 
CGTTGCCGCG AGGAACAGGG CCTGAGCGCG ATGCACTGGC TGCGCGGCCT TCGGCTGGCG 
CATGCGCGCG AACTGCGGCT CGAAGGCATG GGCGTGGCCG AAACCGCGCG CCGCACGGGC 
TACCGCTCGC CCTCGGCGCT CACCGCCGCG CTGCGCCGGC GCGATCGCTG CTGA 

 

Protein sequence

MHQPAPPILS LRHYGSSRGS HAHDHFQVLV GLEGVLEIEI EGRGGGIGAG QAQVVAPGDR 
HDFEARGSGG SSCLVLDTAH APWARCAGRA PADPLQLHAL ARYLAHCTAQ PRQFALALQH 
GPALLLEAWS PAPSSSMPHT RRRRIDWPAL AAWARARWHE PLTVADLAEV ACLSPSQLAQ 
RCREEQGLSA MHWLRGLRLA HARELRLEGM GVAETARRTG YRSPSALTAA LRRRDRC