| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4866 |
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| Symbol | |
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| ID | 7971560 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5185071 |
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| End bp | 5186612 |
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| Gene Length | 1542 bp |
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| Protein Length | 513 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795461 |
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| Product | ABC transporter related |
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| Protein accession | YP_002946736 |
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| Protein GI | 239817826 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAACG CAGAAGCACA AGGCAAGGGA AGCGTGGCGG TCGAATTCGA CGGCGTGGTG
AAGGCCTTCG GCCCGGTGCA GGTGCTGCAC GGCGTGAGCT TCTCGCTGGC GCCCGGACGC
GTGTATGGCC TGCTCGGCGA GAACGGCGCG GGCAAGTCCA CGCTGATGAA GATCCTGTCG
GGCTACGAGC CGCTCACCGG CGGCACGCTG CGCATCAACG GCCAGCCGCA GCAGTTCACG
AGCTCGCGCG ACGCCGAGGC GCTGGGCATC GTGCTGATCC ACCAGGAGTT CAACCTTGCC
GAAGACCTGA GCGTGGCGCA GAACATCTTC CTGGGCCACG AGAAGAAGAA GGGCTGGCTG
CTCGACGACG CCGCGATGGA GCGCGACGCT GCGGCAGCTC TTGCCGCTGT GGGCCTGCAG
GTCGATCCGC GCACCAAGGT GCGAAGGCTC ATCGTGGCCG AGAAGCAGCT CGTCGAAATT
GCCAAGGCCA TTGCACGCCG CGCGCGCCTG CTGGTCATGG ACGAGCCCAC GGCAACGCTG
ACCCCGGGCG AAACCGAACG GCTCTTCAAG CTCATTGCGC AGCTGCGCGC CGATGGCGTG
ACCATCGTCT ACATCTCGCA CAAGCTCGAC GAAGTGGAGC AGGTGACGGA CGAGGTGATC
GTGATGCGCG ACGGCCGCTT CGTGGCGCGT GCGCCCACGC CCGAGCTCAC GCGCCAGCAG
ATGGCCAACC TCATGGTGGG CCGCGAGCTG GCCGACCTGT ACCCGCCGCG CGACCTGGTG
GTGGCCGCCG ATGCGCCCGC CATGCGCGTG CGCAGCTTCA GCGTGCCCGG CTGGGCGCAG
GACGCGAGCT TCGAGGTGCG CCCCGGCGAG ATCCTCGGCT TCGCGGGGCT GGTGGGCGCG
GGCCGCACCG AGCTGTTCGA AGGCCTGCTG GGCCTCAGGC CCGCGAGCGG CGAGGTCGAG
ATGCTTGGCA GGCCGGTGCC GCACCACAAG GGCTGGCGCA ATCCGCGCGA CGCCGCGAAG
CACGGTCTCA CCTACCTGAG CGAGGACCGC AAGGGCAAGG GCCTGCACGT GAACTTCGGC
CTGCGCCAGA ACCTCACGCT GATGGCGCTC GAACGCTATG CGAAGCCCTG GCTGCAGCCC
GACGCCGAAC GCGGCGCGCT GGCCGAGGCG GTGAAGGACT ACGGCATCCG CACCGGCTCG
CTCGACGTGC GCGCCTCATC GCTCTCGGGC GGCAACCAGC AGAAGCTCGC GCTCGCCAAG
GTGCTGCAGC CCAAACCGAA GGTGGTGGTG CTCGACGAGC CCACGCGCGG CGTCGACATC
GGTGCCAAGC GCGACATCTA CTTTCTGATC CAGCGACTCG CCCGCGAAGG GCTCGCGGTG
ATCGTCGTCT CGTCGGAGCT GATGGAACTC ATCGGCCTGT GCCACCGCGT CGCGGTGATG
CGCGCGGGCC GCCTGGTTGC CACGCTCAAC GCCGACCACT TGACTGAAGA GGAGCTCATC
GCTCATGCCA CCGGAACAGC AGACACCCAT GCCGCAGCCT GA
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| Protein sequence | MTNAEAQGKG SVAVEFDGVV KAFGPVQVLH GVSFSLAPGR VYGLLGENGA GKSTLMKILS
GYEPLTGGTL RINGQPQQFT SSRDAEALGI VLIHQEFNLA EDLSVAQNIF LGHEKKKGWL
LDDAAMERDA AAALAAVGLQ VDPRTKVRRL IVAEKQLVEI AKAIARRARL LVMDEPTATL
TPGETERLFK LIAQLRADGV TIVYISHKLD EVEQVTDEVI VMRDGRFVAR APTPELTRQQ
MANLMVGREL ADLYPPRDLV VAADAPAMRV RSFSVPGWAQ DASFEVRPGE ILGFAGLVGA
GRTELFEGLL GLRPASGEVE MLGRPVPHHK GWRNPRDAAK HGLTYLSEDR KGKGLHVNFG
LRQNLTLMAL ERYAKPWLQP DAERGALAEA VKDYGIRTGS LDVRASSLSG GNQQKLALAK
VLQPKPKVVV LDEPTRGVDI GAKRDIYFLI QRLAREGLAV IVVSSELMEL IGLCHRVAVM
RAGRLVATLN ADHLTEEELI AHATGTADTH AAA
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