| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4854 |
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| Symbol | |
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| ID | 7971548 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5171781 |
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| End bp | 5172725 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795449 |
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| Product | protein of unknown function DUF477 |
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| Protein accession | YP_002946724 |
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| Protein GI | 239817814 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1512] Beta-propeller domains of methanol dehydrogenase type |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.381916 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCTTG CCCTCTTCCG CCGTGTGCTG GCCACCGTCC TGCTGGCCGC GGCTGCATGG
GCCGGCCTTG CGGGAGCGGC ATGGGCGCAG GGCCTGCTGC CGGTGCCGGC GCTCACGGCG
CGGGTGATCG ACCAGACGCA GACGCTGGCC GAATCCGAGC GCGCCGATCT CGAGGCCAAG
CTGGCCGCGT TCGAGCAGCG CAAGGGCTCG CAGATGGTGG TGCTGATGGT GCCCACCACC
GCTCCCGAAG ACATTGCGAG CTACGCCAAC CGCGTGGGCA ATGCCTGGAA GATCGGGCGC
AAGGAGGTCG GCGACGGCAT CCTGGTGATC GTGGCCAAGA ACGACCGCAA GATGCGCATC
GAGGTGGCCA AGGCGCTCGA GGGCGCGGTG CCCGACCTCG CAGCCATTCG CATCATCGAC
GAGGAGATGA AGCCGCGCTT TCGCAACAAC GACTTCGCGG GCGGGCTGAA CGCGGCCGTG
GCCCGGCTCA TCGGGCTGGT CGATGGCGAG GCGCTGCCCG CGCCTTCCAG CAGCGGCGGC
GGCAGCAGCA GCAAGGATTC CAGCGAAGGC ATCGACTGGG AGAACCTCGC GATCTTCCTG
TTCGTCGGCG TCTTCGTTGC GGCACCGATC GTGCGCTCGA TCGCCGGCAA GAAGCTGGGC
TCGGTGGTCA TGGGCGGCGG CATCGGCGTG ATTGCCTTCC TCATCACGAC CAGCATCGTC
ATCGCGGTGC TGGCGGGCAT GGCGGCGCTC ATGGTGTCGC TGTTCTCGGC CGTGGCGGCG
ACGAGCCCGG CGCGGCGCGG CGGTGGTGGT GGTGGCGGAT TCGGCGGCTG GGGCGGCGGC
GGTGGTGGCG GCGGCTGGAG CAGTGGCGGC AGCAGCGGTG GCGGAGGCTT CAGCTCCGGC
GGCGGTGGCG ATTTCGGGGG CGGCGGCGCC TCGGGGGACT GGTAG
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| Protein sequence | MALALFRRVL ATVLLAAAAW AGLAGAAWAQ GLLPVPALTA RVIDQTQTLA ESERADLEAK
LAAFEQRKGS QMVVLMVPTT APEDIASYAN RVGNAWKIGR KEVGDGILVI VAKNDRKMRI
EVAKALEGAV PDLAAIRIID EEMKPRFRNN DFAGGLNAAV ARLIGLVDGE ALPAPSSSGG
GSSSKDSSEG IDWENLAIFL FVGVFVAAPI VRSIAGKKLG SVVMGGGIGV IAFLITTSIV
IAVLAGMAAL MVSLFSAVAA TSPARRGGGG GGGFGGWGGG GGGGGWSSGG SSGGGGFSSG
GGGDFGGGGA SGDW
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