Gene Vapar_4851 details

Gene Information

• Locus tag: Vapar_4851
• ID: 7971545
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 5169671
• End bp: 5170345
• Gene Length: 675 bp
• Protein Length: 224 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644795446
• Product: isochorismatase hydrolase
• Protein accession: YP_002946721
• Protein GI: 239817811
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG1335] Amidases related to nicotinamidase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGGCCT GGATCTACAA CCAGGAGCGC GAGCTCGACG CGGCGCAGTT CGCCGACTAC 
CTGGACCCGG CCACCACCGC GGTCGTGTCC ATCGACATGC ACCGCGGCCA CCTGGACGAC 
GGCCCCGACT GCCCCTGCCC CGCCCCGCGG GCGCGCGACG TGGTGGCGCC CATCGACGGC 
TTCCACGACG CGGTGCGCGC GCTGGGCGTG CGCATCGTGC ACATCCGGTC GGTGCTGCGG 
CCCGGCGGCC TGGACGACAT CCACGGCATT CCGTCCGCAT GGCGCCGTAC CTTTCCGCTG 
CACGTGGGCG AAATCCCGAA TGCCGACGCG CACGCCATCG AAGGCTCCAA GTGGACCGAG 
TGGGTCACGC GCGTGGCGCC CGGCGACATG CGCGTGGACA ACAAGCGGCG CCTCTCGGCC 
TTCTACCCGA CCGACCTCGA CTTCCTGCTG CGCAACCAGC GCATCGAGAC GGTGGTGCTC 
AACGGCGGCT TCACCGACTG CTGCGTGCTC AACACGGCCT TCGACGCGAG CAACCGCAAC 
TACCGCGTGA TCGTGCTGCG CGACCTGGTG CGCGGCACCG ATGCGCACCT GGAAGGCGCG 
GCGCTTGCGA TGGTGTCGCT GCACCTGGGG CTGGTGCTCG ACTCGGCCGA ACTGCTGCGC 
CTGTGGCGCG GCTGA 

 

Protein sequence

MKAWIYNQER ELDAAQFADY LDPATTAVVS IDMHRGHLDD GPDCPCPAPR ARDVVAPIDG 
FHDAVRALGV RIVHIRSVLR PGGLDDIHGI PSAWRRTFPL HVGEIPNADA HAIEGSKWTE 
WVTRVAPGDM RVDNKRRLSA FYPTDLDFLL RNQRIETVVL NGGFTDCCVL NTAFDASNRN 
YRVIVLRDLV RGTDAHLEGA ALAMVSLHLG LVLDSAELLR LWRG