| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4839 |
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| Symbol | |
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| ID | 7970310 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5158834 |
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| End bp | 5159592 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795434 |
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| Product | isochorismatase hydrolase |
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| Protein accession | YP_002946709 |
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| Protein GI | 239817799 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1335] Amidases related to nicotinamidase |
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| TIGRFAM ID | [TIGR03614] pyrimidine utilization protein B |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.722387 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCACTC CCGCACGCAA CACCACCCTC ACATCGAACA CCCCCGCTGG CGCGCCGCGC
CTGCCCGGCG CACCGGCGCC GCAGGTGCTG CCCGCGCGGC CCGAACCGCT CGCGCTGCAT
GCCAGCGACT CGGCCCTGAT CGTGGTCGAC ATGCAGAACG CCTATGCGTC GATGGGCGGC
TATGTCGATT CGGCCGGCTT CGATATTTCC GGCGCGCAGG GCACCATTGC CAACATCGCG
CGCACCATCG CGGCGGCGCG CACGGCCGGC ATGCTGGTGG TGTTTCTGCA GAACGGCTGG
GACGCCGCCT ACGTCGAGGC CGGCGGACCG GGCTCGCCCA ACTGGCACAA GTCGAATGCG
CTCAAGACCA TGCGCGCGCG GCCCGAGCTT GCGGGCAAGT TCCTCGCCAA GGGCGGCTGG
GACTACGAAC TCATTGCCGA GATGAAGCCG CAGCCCGGCG ACATCGTGGT GCCCAAGACG
CGCTACAGCG GCTTCTTCAA CAGCACGCTC GACAGCACGC TGCGCGCGCG CGGCATCCGC
CACCTGGTGT TCACCGGCAT CGCGACCAAC GTGTGCGTGG AGTCGACCCT GCGCGATGCC
TTCCACCTCG AATACTTCGC CGTGATGCTG GAAGACGCGA CGCACGAGCT TGGCGGCGCG
GCCATCCAGA AGGCATCGGT CTACAACGTC GAGACCTTCT TCGGCTGGGT CTCCACCGTC
GACGACTTCG TGCGCAGCTT CGCGCCGGCC ACGGCCTGA
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| Protein sequence | MSTPARNTTL TSNTPAGAPR LPGAPAPQVL PARPEPLALH ASDSALIVVD MQNAYASMGG
YVDSAGFDIS GAQGTIANIA RTIAAARTAG MLVVFLQNGW DAAYVEAGGP GSPNWHKSNA
LKTMRARPEL AGKFLAKGGW DYELIAEMKP QPGDIVVPKT RYSGFFNSTL DSTLRARGIR
HLVFTGIATN VCVESTLRDA FHLEYFAVML EDATHELGGA AIQKASVYNV ETFFGWVSTV
DDFVRSFAPA TA
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