Gene Vapar_4830 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4830 
Symbol 
ID7970301 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp5147895 
End bp5148575 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content69% 
IMG OID644795425 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002946700 
Protein GI239817790 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.456248 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGTGGCAC GTCGTACGAA GGAAGAGGCA CTGGCCACGC GGAATCGCTT GCTCGATGCC 
GCGGAGCTGC TGTTTCAGGC GCAAGGCGTC TCGCAGACCT CGCTGCAGCA GATTGCGCAG 
CAGGCCGGGG CCACGCGCGG CGCCATCTAT TGGCACTTCA AGGACAAGGC CGCCCTCTTC 
AACGCCATGA TGGAACGCGT CATCCTCCCG CTGGAGGCCG GCCCCCGCGC TGCCGCCGCA 
GCCGCGGGCC CCGACGACGA CCCGTTGGCC GAGATAGAAG AGGGCATGGT GCACGCCCTC 
ACCCTCATGA CCACCGACCC CCAGGTGCGC CGCGTGTTCG ACGTGGCCAC CCACAAGGTC 
GAATACACCC ACGACATGGC CTCGGTGCAG CAGCGCCACC TGGACGCCCG CAACGCCTGC 
GTGGGCGATT TCGAAAAAGC CCTGCGCCTG GCCGCGCGGC GGGACCGCAT CAAGCTGCCC 
GTGCCCGGCC CCGCCGCCGC CCAGGGCCTG CACGCGCTGA TCAGCGGGCT CATCCAGAAC 
TGGCTGCTCG ACCCCACCGC CTTCGACCTG GTGCCCACCG GCCGCCGCAC CTTCCGCGTC 
TACCTGGCCG GCCTGGGCTT TGTGCGGAAC TCCCCGGCGG GCATCGGAAA CGAAGCAGGT 
GAAGAAGAAA TCGCCGCCTG A
 
Protein sequence
MVARRTKEEA LATRNRLLDA AELLFQAQGV SQTSLQQIAQ QAGATRGAIY WHFKDKAALF 
NAMMERVILP LEAGPRAAAA AAGPDDDPLA EIEEGMVHAL TLMTTDPQVR RVFDVATHKV 
EYTHDMASVQ QRHLDARNAC VGDFEKALRL AARRDRIKLP VPGPAAAQGL HALISGLIQN 
WLLDPTAFDL VPTGRRTFRV YLAGLGFVRN SPAGIGNEAG EEEIAA