| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4821 |
|---|
| Symbol | |
|---|
| ID | 7970291 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 5139088 |
|---|
| End bp | 5140080 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644795416 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002946692 |
|---|
| Protein GI | 239817782 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCTCGT ATTCCGCACC CCGCCGGCAT TGGCTGGCAT TCGCCGCCGC CCTCGCCTGC
AGCGCCGCGC TGCCCCTGCA GGCGCAGCCC GCCACCCCCT GGCCGTCCAA GCCCGTGAAG
CTCGTGGTCG GCTATGCCGC CGGCGGCGCC ACCGACGTGA TCGCGCGCCT CGTCGCCATC
AAGCTGGGCG AGCAGCTCGG CCAGCCCCTG CTGGTGGACA ACCGAACGGG CGCCAACAGC
AACGTGGGCG CCGAGTACGT GGCCCGCGCG CCCGCCGACG GCTACACGCT CTACGTCTAC
ACCATCGCGA ACACCATCAA TGCCTCACTC TACGGCAAGC TCGGCTACGA CCCGGTCAAG
GACTTCGAGC CCGTCGGCCT GATCGCCAAG ATTCCCAACA TCCTCGTGGT GAACCCGTCG
TTGCCCGTGA AGAACGTGGC CGAATACGTG CGCTTTGCCA AGGAGTCGAA AGAGGGCATC
ACCTTCGCGT CGTCCGGCAG CGGCTCGTCC ATCCACCTGT CGGGCGAGAT GTTCAAGATG
CAGGCCGGGC TCAACATGCT GCACGTGCCC TACCGCGGCA GCGCGCCCGC CATCACCGAC
CTGCTGGGCG GCCAGGTGCA GTCGATGTTC GACAACACGC CGTCGGCCCT GCCGCACGTG
CAGGGCGGGC GCCTGCGCGC CATTGCCATC ACCAGCGCCC GGCGTTCGCC GCTGCTGCCC
GACGTGCCCA CGCTGGCCGA GTCGGGCTAT CCGGGCTTCG ACGTGCAGTC GTGGTTCGGC
TTGGCGGCCC CCGCGGGCAC ACCGCGCGCC GTGATCGACC GCCTGAATAC TGCGCTCGGC
AAGGTGCTGG CCGCGCCCGA TGTGCGCCAG CGCCTGCAGG AGCTGGCCGC CACCCCCGAA
CCCGGCACGC CCGAGCAGAT GCGCAGCTTT GCCGCGGCCG AGATCAAGCG CTGGCGCGAC
GTCGTGAAGG CATCCGGCGC CAAGGCCGAC TGA
|
|---|
| Protein sequence | MSSYSAPRRH WLAFAAALAC SAALPLQAQP ATPWPSKPVK LVVGYAAGGA TDVIARLVAI
KLGEQLGQPL LVDNRTGANS NVGAEYVARA PADGYTLYVY TIANTINASL YGKLGYDPVK
DFEPVGLIAK IPNILVVNPS LPVKNVAEYV RFAKESKEGI TFASSGSGSS IHLSGEMFKM
QAGLNMLHVP YRGSAPAITD LLGGQVQSMF DNTPSALPHV QGGRLRAIAI TSARRSPLLP
DVPTLAESGY PGFDVQSWFG LAAPAGTPRA VIDRLNTALG KVLAAPDVRQ RLQELAATPE
PGTPEQMRSF AAAEIKRWRD VVKASGAKAD
|
|---|
| |