| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4812 |
|---|
| Symbol | |
|---|
| ID | 7970282 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5131304 |
|---|
| End bp | 5132002 |
|---|
| Gene Length | 699 bp |
|---|
| Protein Length | 232 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644795407 |
|---|
| Product | alanine racemase domain protein |
|---|
| Protein accession | YP_002946683 |
|---|
| Protein GI | 239817773 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0325] Predicted enzyme with a TIM-barrel fold |
|---|
| TIGRFAM ID | [TIGR00044] pyridoxal phosphate enzyme, YggS family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGATGA TTGGCGACGA CCTCCAGCAA GTAAAGAACC GGATCGCAAA GGCCTGCGCC
GAACATGGGC GCAACCCGGC CGAAGTCCGG CTGCTGGCGG TGTCCAAGAC CTTCGGGCCC
GAGGCCGTGC GCGAGGCCCA TGCGGCGGGC CAGCGGGCGT TCGGCGAGAA CTACGTGCAG
GAGGGGCTGG ACAAGATCGC CGCGCTGTCG GACCTGCGCG CGGAGCTCGA ATGGCACTGC
ATCGGCCCTC TGCAGAGCAA CAAGACGCGG CCCGTGGCCG AGCATTTCGA CTGGGTGCAC
GGCATCGACC GGCTCAAGAT CGCCGAGCGC CTTTCGGCGC AGCGGCCGGC GCATCTGCCG
CCGCTTCAGG TGTGCCTGCA GGTCAATGTG GACGGCGGCG CCAACAAGTC CGGCGTGCCG
CCCGAAGAGG CGCTGCCGCT CGCGCGCGCT GTGGCGGCAT TGCCACATCT GCGGCTGCGC
GGGCTCATGG CCATTCCTGA ACCGGCGCCG GATTTCGCCG CGCAGCGCGA GCTGTGCCTG
CGCGCCCGCG CCGTGTACGA CGCGATCCGC GACGCCGGCG TCGAACTCGA CACCCTTTCG
CTCGGCATGA GCGCCGACCT CGAAGCAGCC GTGAGCGCCG GCAGCACGAT GGTGCGCATC
GGCACGGCGA TCTTCGGCGG CCGGCCCAAG GCCGCCTGA
|
|---|
| Protein sequence | MTMIGDDLQQ VKNRIAKACA EHGRNPAEVR LLAVSKTFGP EAVREAHAAG QRAFGENYVQ
EGLDKIAALS DLRAELEWHC IGPLQSNKTR PVAEHFDWVH GIDRLKIAER LSAQRPAHLP
PLQVCLQVNV DGGANKSGVP PEEALPLARA VAALPHLRLR GLMAIPEPAP DFAAQRELCL
RARAVYDAIR DAGVELDTLS LGMSADLEAA VSAGSTMVRI GTAIFGGRPK AA
|
|---|
| |