| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4793 |
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| Symbol | |
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| ID | 7970263 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5107738 |
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| End bp | 5109351 |
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| Gene Length | 1614 bp |
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| Protein Length | 537 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795388 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_002946664 |
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| Protein GI | 239817754 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGACAT TGCCCGACCG TCCGCAACAG CCCCTGCACG AATACCTGCG CGCCCATGCG
CGCGAGCGCG GCGAACGCCC GGCCTGCCTC TGGTACGGCC ACGCCATGAG CTGGGCGCAG
CTCGACCGCG CGAGCGACGC CTTCGCGGCG CGGCTGCAGG CCATCGGCGT GAAGAAGGGC
GAGCCGGTGG TGCTGTTCCT CAACAACTGC CCGCAGTACC TGGTCGCGCA TTTCGGCATC
CAGAAGATCG GCGCCATCGT CTGCCCGGGC AGCCCGCTCA ACAAGGAGCA TGAGCTGGCC
TACCAGGTCA ACGACCTGCA GGCGCGCGTG ATCGTCGCCG CCGCGCCGCT GCTGCCGGTG
GTGCGCAAGG TGCAGCCGCA GAGCGCGCTC GCGCATGTGT TCGTGGTGCA CTACGCCGAC
CTGCTGCCCG AAGAGCCCGT GCCCGACCTT CCCGCCGAAC TGCTCGCCGA GCGCGGCGCC
CCGCGCAGCG TGCCCGAAGG ATGCGAAGAC TTCCTGGCCG TGATGCAGGG CGGCGCGGTG
CCGCAGCCGG TGGCCATCGA CCTCGACGAC GTGGCGCTCA TGACCTACAC CTCCGGCACC
ACAGGCCTGC CCAAGGGCGC GATGCTGAGC TACGGCAATG CGCTCTTCAA GACCCGCGCG
GCGGCCGACT GCAACGGCGT GGCCGGCGAC GACGTGCTGC TTTCCATTGC GCCGCTCTAT
CACATCGCCG GCATGCTGAT GGGCGTGAAC GTGCCGGTGC TCAGCGGCGC GGCCTCGGTG
CTGCTGCACC GCTTTGATCC GCGCGCGGTG CTGCAGGCCA TTGCGCGCTA CAAGGTGAGC
TGGTGGTACA GCATCGCGCC GATGAACGTG GCCTGCATGC AGGTGCCGGA CATCGCGGGC
TTCGACCTCT CGAGCCTGCG GCGCAATCCG GTCACGAGCT TCGGCATCGC CTTCACCGAG
CCGCCGGCCG CGCAGTGGCG CGCGCATGCG CCCAACTGCA CGTCGTTCGA GGCCGCCTAC
GGGCTCAGCG AAACCCACAC CTGCGACACC TACACGCCGC ACCATGCGCC GCGCTGGGGC
ACCCAGGGCG TTGCGGTGCC GGGCGTGCGC ATCCGCATCA TTGATCCCGA CACGCAAGCC
GACCTGCCCG CGGGCGAGGT CGGCGAGATC GTGCTCGCGA GCCCCGGCTC CTTCAAGGGC
TACTGGAACA AGCCCGAGGC CACAGCGGCC ACGCTGCGCA ATGGATGGGT GCACACCGGC
GACATGGGCA AGCTCGATGC CGACGGCTAC CTGACCTTCA TCGGCCGCTT CAAGGAGATG
ATCAAGGTCT CGGGCTACAG CGTGTTCCCC GAGGAGGTCG AGACCATCCT CATCAAGCAT
CCCGCGGTGG CCCAGGCCGC GGTCATTGCG CAGCCCGATG CCGAGAAGGG CGAGGTCGTC
AAGGCCTTCA TCGTGCGCAA GCCCGGCGCG GCGCTCGAGG CCGATGCGCT CATCGCCTGG
TCGCGCGACA ACATGGCCAG CTACAAGGCG CCGCGCGCCG TGAGCTTCAT CGATGCCTTG
CCGACCACCG GTGCCGGCAA GGTGCTGCGG CGCCTGCTGA AAGACAAAGC CTGA
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| Protein sequence | METLPDRPQQ PLHEYLRAHA RERGERPACL WYGHAMSWAQ LDRASDAFAA RLQAIGVKKG
EPVVLFLNNC PQYLVAHFGI QKIGAIVCPG SPLNKEHELA YQVNDLQARV IVAAAPLLPV
VRKVQPQSAL AHVFVVHYAD LLPEEPVPDL PAELLAERGA PRSVPEGCED FLAVMQGGAV
PQPVAIDLDD VALMTYTSGT TGLPKGAMLS YGNALFKTRA AADCNGVAGD DVLLSIAPLY
HIAGMLMGVN VPVLSGAASV LLHRFDPRAV LQAIARYKVS WWYSIAPMNV ACMQVPDIAG
FDLSSLRRNP VTSFGIAFTE PPAAQWRAHA PNCTSFEAAY GLSETHTCDT YTPHHAPRWG
TQGVAVPGVR IRIIDPDTQA DLPAGEVGEI VLASPGSFKG YWNKPEATAA TLRNGWVHTG
DMGKLDADGY LTFIGRFKEM IKVSGYSVFP EEVETILIKH PAVAQAAVIA QPDAEKGEVV
KAFIVRKPGA ALEADALIAW SRDNMASYKA PRAVSFIDAL PTTGAGKVLR RLLKDKA
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