| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4786 |
|---|
| Symbol | |
|---|
| ID | 7970256 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5098246 |
|---|
| End bp | 5099307 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644795381 |
|---|
| Product | membrane protein AbrB duplication |
|---|
| Protein accession | YP_002946657 |
|---|
| Protein GI | 239817747 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3180] Putative ammonia monooxygenase |
|---|
| TIGRFAM ID | [TIGR03082] membrane protein AbrB duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.300421 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCTCTCC GCTTCCTGGT TCGCGTGCTG GCCACGCTGT TGCTCGCGCT CGCCGCGGCC
GAAATCTGCC TCGCCCTGCA CACCCCACTG CCGTGGATGA TCGGCCCGCT GCTGGCGGTG
TCGCTGGCGT CGATTGCCGG CGCGCCCACG GCCAGCTTCA CGCCGCTGCG CAATGCCGGG
CAATGGACCA TCGGCACGGT GCTGGGCCTT TATTTCACGC CGCAGGTGGT GGCGCTGGTG
GCCGGCGTCT GGTGGGCCAT TGCGCTGGCC ATCGCCTGGG CCCTGCTGCT CGGCTGGGGG
TTCGGGCGCT GGCTGCATGG GCTGCACGCC CGGCGGATGC CGCATGTGCC GGACAGCTCC
ATGAGAGCCA CGACTTACTT CGCTGGCGCC ATCGGCGGCG CCTCCGAGAT GACGCTGCTG
GCCGAATCGG CCGGCGCGCG CACCGACCTC GTGGCCGCGG CGCACAGCCT GCGGCTGGTG
GTGGTGACCA TCGCCATTCC GTTCGCAATG CAGTGGAGCG GCCTGCACGG GCTCGAAGTC
AATCCGTCCA CGGTGCGCGA AGTGAACCCC GGCGGGCTCC TGCTGCTGGC GCTGGCCACC
GCCGCCGGCG GGCTTGCGAT GCGGGCGCTG GGCCGCACCA ACCCCTGGTT CATGGGGCCG
CTGCTGGTGG CGATGAGTTT CACCATCGCC GGCCAGCCGC TGTCGGCCGT GCCCGGCTGG
ATGTCGAACA CCGCGCAGCT CGTGATTGCG GTCAGCCTGG GCGTGCGCTT CAGCCGCGAA
TTCCTGCACA CGGCGCCGCG CTGGCTGGGA TCGGTGGCGC TGGGCACCGT CGGCATGCTG
GTGCTGTGCG CGGGGGCCGC CTGGCTGCTG GCTTGGGCGA CGGGGCTGCA TCCCGCCACC
ATGATCCTGG GCACTTCGCC GGGCGGCATT GCCGAGATGT CGATCACCGC CAAGGTGCTG
CAGCTGGGCG TGCCGGTGGT GACGGCGTTC CAGGTCTGCC GGCTGGTGGC GGTGCTGTTG
CTCGCGGGGC CGATGTACCG ATGGATTTAC CAACGGAAAT GA
|
|---|
| Protein sequence | MSLRFLVRVL ATLLLALAAA EICLALHTPL PWMIGPLLAV SLASIAGAPT ASFTPLRNAG
QWTIGTVLGL YFTPQVVALV AGVWWAIALA IAWALLLGWG FGRWLHGLHA RRMPHVPDSS
MRATTYFAGA IGGASEMTLL AESAGARTDL VAAAHSLRLV VVTIAIPFAM QWSGLHGLEV
NPSTVREVNP GGLLLLALAT AAGGLAMRAL GRTNPWFMGP LLVAMSFTIA GQPLSAVPGW
MSNTAQLVIA VSLGVRFSRE FLHTAPRWLG SVALGTVGML VLCAGAAWLL AWATGLHPAT
MILGTSPGGI AEMSITAKVL QLGVPVVTAF QVCRLVAVLL LAGPMYRWIY QRK
|
|---|
| |