| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4774 |
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| Symbol | |
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| ID | 7970244 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5085763 |
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| End bp | 5088045 |
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| Gene Length | 2283 bp |
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| Protein Length | 760 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795369 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_002946645 |
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| Protein GI | 239817735 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.594782 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCATTTC CCCTTGGCGC GCCCGCGTGG GCGCAGGACG CGCCTGATCC ATCCGGCGGC
AGCGGTGCGC GCACCCTGAG CACCGTCACG GTCAGCGGCG GCCGCCCGAC CTCGCTGCCG
ACCCAGATTC CGACCACCAT CGAGGGCGTG ACGCACGAGC AGATCGCCGA AACCGTCAAC
GCCACCGACG GCGAAGACGC GCTCAAGTAC CTGCCCAGCC TCGTGGTGCG CAAGCGCTAC
ATCGGCGATT TCAACCATGC GGTGCTTGCC ACGCGCGCCT CCGGCACGGG CAACAGCGCT
CGCTCGATGG TGTATGCCGA CGGCGTCATG CTGTCGAACC CGCTGGGCAA CGGCGCTACC
TACGCGCCGC GCTGGGGCAT GGTCTCGCCC GAGGAGATCG AGCGGGTCGA CGTGCTGTAC
GGGCCGTTCT CGGCGGCCTA TCCGGGCAAC TCGGTCGGCG CCGTGGTCGA CTACGTGACG
CGCATGCCCA CCCGGCTCGA AGCGCACGCC AAGCTCAGCG GCTTCGCCTC CAACTTCGAC
CTGTACAACA GCCACTCCTC GCCCGCCGGC CAGCAGCTCG AGCTCTCGCT GGGCAGCCGC
AGCGGCGACT GGTCATGGTG GCTCAGCGCC TCGCGCACCC ACAGCAAGGG GCAGGCGCTG
GTGTTCGGCA ACCGGCTCGC GAGTGCCGGC ACCCTGGGCA ATGCCGGCAC GCCGGTCACC
GGGGCGGTTC TGGGGCTGAA CCCGTCGAAC CAGCCCTGGT GGCTGGTAGG CGGCTCGACG
ATCTACGACA CCACGCAGGA GCAGGCCAAG CTCAAGCTGG CCTACGATTT CTCGCCCACG
GTGCGCGCCA CCTACACGCT GGGCGCCTGG AACAACACCA CGCACGGCAG CGTCGACACC
TACCTGCGCG ATGCCTTCGG TGGGCCGGTG TATTCGGGGC GCGTGAACAT CGCCGGGCGG
AGCTACAACC TCGATGCGCC GAGCGCCGCG CTGGCGCCGA CCGAAACCGC GCTCACCCAC
TACATGCATG GCCTCTCGGT GAAGAGCCAC ACCGGCGGGG TGTTCGACTG GGAGCTGTCC
GCAAGCCTGT TCGACTATGC GCGCGACACC TCGCGCACGC CGACCACGCC GCTGCCCGGC
GCCTTCAACG GCGGACCGGG CCGCACCACC GACATGGGGG GCTCCGGCTG GCACACCTTC
AAGGCCGCCG GCACATGGCG GCCCATCGGC TCGGCCGAGG GCGTGGGCGC GCACGTGGTC
GACTTCGGCT TCCAGCAGGA CACCGCCCGC CTGCGCACCA GCGTCGGCAA CACGCTCGAC
TGGATCGCCG GGCCGGCCGT GTCGCCGTTC TCCGGCTTCA ACGGCAACAC CCGGCTGCAG
TCGCTCTACG TGCAGGACAC CTGGCGCTTC GCCAAGGACT GGAAGACCAC GCTCGGCCTG
CGCCACGAAC GCTGGGAGGC CTACGGCGGC CAGCTCGGCA GCGCGACGAA GCTGCTCGAC
TTCGCGCCGC GCAGGAACAG CTACGACTCG CCCAAGGCGG CCCTTGCCTG GCAGGCCACG
CCGGACTGGC TGCTCAAGGC ATCGACCGGC CGGGCAGTGC GCATGCCGAC GGTGAGCGAG
CTCTACCAGG GCTCGATCGA CGGCAACCGC ATCGTCAACA CCGATCCGAA CCTGCGGCCG
GAGCGCTCCT GGACGACGGA GCTCAGCGCC GAGCGCGACC TGAAGGGCTG GGGGCTCGAC
GGCGTGCTGC GCACCACGCT GTTCTTCGAG AACACCAAGG ACGCGCTCTA CAGCCAGGCC
CTCACCAATC TGGTCAGCAC GGTGCAGAAC GTCGATGCCA TCCGCACCCG CGGCCTGGAG
GTGGCGCTGA ACGCGGTCGA CGTGGGCGTG AAGGGGCTGG ACCTGAGCGG CAGCCTCACG
CTGACGCGCT CGAAGATCGC GGCCAACAGC GGTTTTCCGG CCAGCGTCGG CCGCGAGCAG
CCGCGCGTGC CGAAGCTGCG GGCCACGCTG CTCGCCACCT ACCGGCCCGA TGCGAGGTGG
AGCTACACCG TCGGCGCCCG CTACAGCGGC AAGCAGTACG GCACGCTCGA CAACAGCGAC
GGCAACGGCG CGGCCTACAT GGGCTTCTCG AAGTTCTTCG TGGTCGACGC GCGCATCCGC
TACCGGATCG ACCGGCAATG GAGCGCCGCC TTAGGCATCG ACAACCTGAA CAACAACAAG
TACTGGGCCT TCCACCCCTA TCCGCAACGC ACCTACGTGG CCGAACTCAA GTTCGACCTC
TGA
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| Protein sequence | MAFPLGAPAW AQDAPDPSGG SGARTLSTVT VSGGRPTSLP TQIPTTIEGV THEQIAETVN
ATDGEDALKY LPSLVVRKRY IGDFNHAVLA TRASGTGNSA RSMVYADGVM LSNPLGNGAT
YAPRWGMVSP EEIERVDVLY GPFSAAYPGN SVGAVVDYVT RMPTRLEAHA KLSGFASNFD
LYNSHSSPAG QQLELSLGSR SGDWSWWLSA SRTHSKGQAL VFGNRLASAG TLGNAGTPVT
GAVLGLNPSN QPWWLVGGST IYDTTQEQAK LKLAYDFSPT VRATYTLGAW NNTTHGSVDT
YLRDAFGGPV YSGRVNIAGR SYNLDAPSAA LAPTETALTH YMHGLSVKSH TGGVFDWELS
ASLFDYARDT SRTPTTPLPG AFNGGPGRTT DMGGSGWHTF KAAGTWRPIG SAEGVGAHVV
DFGFQQDTAR LRTSVGNTLD WIAGPAVSPF SGFNGNTRLQ SLYVQDTWRF AKDWKTTLGL
RHERWEAYGG QLGSATKLLD FAPRRNSYDS PKAALAWQAT PDWLLKASTG RAVRMPTVSE
LYQGSIDGNR IVNTDPNLRP ERSWTTELSA ERDLKGWGLD GVLRTTLFFE NTKDALYSQA
LTNLVSTVQN VDAIRTRGLE VALNAVDVGV KGLDLSGSLT LTRSKIAANS GFPASVGREQ
PRVPKLRATL LATYRPDARW SYTVGARYSG KQYGTLDNSD GNGAAYMGFS KFFVVDARIR
YRIDRQWSAA LGIDNLNNNK YWAFHPYPQR TYVAELKFDL
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