| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4707 |
|---|
| Symbol | |
|---|
| ID | 7971717 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5003800 |
|---|
| End bp | 5004444 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644795292 |
|---|
| Product | DSBA oxidoreductase |
|---|
| Protein accession | YP_002946578 |
|---|
| Protein GI | 239817668 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3917] 2-hydroxychromene-2-carboxylate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCACA TCGACTTCTA CCTCGACTTC ATCTCGCCCT ACGCGCACCT TGCGTTCGAG
CACCTGCCCC AGGCGCTCGA GGGCCTGAGC TGCAGCGTGG CCTACAAGCC GGTGCTGCTC
GGCGCCATCC TCAAGCACCA CGGCCAGCTC GGCCCGGCCG AGATTCCGGC CAAGCGCAGC
TGGACCTACC GCCATGTGCT CTGGCTCGGC CATGCGAACG GCATCCAGAT CGAGATGCCG
GCCTCGCACC CGTACAACCC GCTGCCGCAC CTGCGGCTCG CGCTGTCGAC CTCGGACGAC
GGCAGCGTCA GCCGCCTGGT GGCCGAGACC ATCCTGCGCA ACGTGTGGCG CGGCGGCGAG
GAAGCCGGCG ATGCCGCGCG CCTGGCTGCG CTGGCGGCGC AGCTGGAACC GAAGCGCGAC
ATGAACGGCG ACGAGAACAA GGCGCTGCTC AAGCGCAACA CCGACGAAGC GCTGCAGCTC
GGCGTGTTCG GCACGCCGAC CTGCAGGGTC GACGGCCGCC TGTTCTGGGG CTTCGACGGC
CTCGCGATGC TGCGCGCCTA TCTCGCCGGC GACGCATGGT TCGACGGCCC GCAATGGGCC
GCGGCCGACC AGCGGCCGTC CTTGCTGCGA AGCAGCAAAA GCTGA
|
|---|
| Protein sequence | MKHIDFYLDF ISPYAHLAFE HLPQALEGLS CSVAYKPVLL GAILKHHGQL GPAEIPAKRS
WTYRHVLWLG HANGIQIEMP ASHPYNPLPH LRLALSTSDD GSVSRLVAET ILRNVWRGGE
EAGDAARLAA LAAQLEPKRD MNGDENKALL KRNTDEALQL GVFGTPTCRV DGRLFWGFDG
LAMLRAYLAG DAWFDGPQWA AADQRPSLLR SSKS
|
|---|
| |