| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4702 |
|---|
| Symbol | |
|---|
| ID | 7971712 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4993170 |
|---|
| End bp | 4999115 |
|---|
| Gene Length | 5946 bp |
|---|
| Protein Length | 1981 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 644795287 |
|---|
| Product | excinuclease ABC, A subunit |
|---|
| Protein accession | YP_002946573 |
|---|
| Protein GI | 239817663 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0178] Excinuclease ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACAGG GCTCCATCCG GATTCGCGGC GCGCGCCAGC ACAACCTCCA GAACCTCGAC
CTCGACATCC GCACCGGCGA GATGACCGTG GTCACCGGGC CCAGCGGCTC GGGCAAATCG
AGCCTCGTGT TCGACACCCT CTATGCCGAG GGCCAGCGGC GCTACGTGGA GACCTTTTCC
GCCTACGCGC GCCAGTTCCT GGACCGCATG GACAAGCCGG CCGTCGACAA GGTGGAGGGC
GTGCCGCCCG CCATCGCCAT CGACCAGACC AACCCGGTGC GCTCCTCGCG CTCCACGGTC
GGCACGATGA CCGAACTCAA CGACCACCTG AAGCTGCTCT ACGCGCGCGC GGCCCAGCTG
TTCGACCGCG AGACCGCGCT GCCGGTGCGC CACGACTCGC CCGACAGCAT CTATGCGCAG
ATCGCCGAGC GCGCGGCTGC GGCGGGCGAT CCGCGGCTGG TGGTCACCTT CCCGGTCGAG
CTGCCGGCCG GCACCTCGGC CGATGAAGTG ACGCAATGGC TGTCGGCCAG CGGCTTCACG
CGCGTGCAGG CCGAGCGCGA GGTGGCCACG CCCACCGGCC CGCGCAAGAT GCTCGACGTG
GTGGCCGACC GCTTCCGCAT CTCGAGCGCC GAGCGCGCGC GCGTGGTCGA GGCCATCGAG
GTGGCGCTCA AGCGCGGCAG CGGGCGCGTC ACGGTGCATG CCACGGGTGC CGACGAGAAC
GCACCCACGG ACGTGTGGAA GTTCTCCACC GGCCTGCACT GCCCCGAGAG CGACATCCGC
TACGCCGACC CGATCCCGTC GATGTTCTCG TTCAACTCGG CCGTCGGCGC CTGCGACACC
TGCCGCGGCT TCGGCCGCGT GATCGGCGTC GACCTGGGCC TCGTGATTCC CAACGACCGG
CTCACGCTGC GCGCCGGCGC GATCAAGACC ATCCAGACCC CCGCCTGGAA GGAAGCGCAG
GACGACCTCA TGCGCCACGC CGAGGCGGCC GGCATTCCGC GCGACACGCC CTGGAACAAG
CTCACCGACG AGCAGAAGCA CTGGGTGATC GAGGGCACGC CCAACTACAA GGAAGGCAAC
TGGAACAAGC AGTGGTACGG CGTGCGCCGC TTCTTCGCGT ACCTGGAGAG CAAGGCCTAC
AAGATGCACA TCCGCGTGCT CTTGTCCAAG TACCGCAGCT ACACGCCGTG CCCCACCTGC
AGCGGCGCGC GCCTGAAGCT CGACAGCCTG ATCTGGCGCA TCGGCAGCAA GGAAGACGCG
GACGCGGTGC TGGAGCCCGC CAAGCGCTTC ATGCCGGCCG GCGTGAAGTG GACGCGCGCG
CAGCTGGAGG CGCTGCCGGG GTTGTGCCTG CATGATTTGA TGCTGCTGCC GATCGAGCGG
CTGCGGCGGT TCTTCGACCG CATGGGTTTG GCTCCCTCCC CCGCCGGGGG AGGGCAGGGG
TGGGGGCACG CGGCCTCTGC AAAAGCTGTG GCGGTGGTGG AGGCCGAGAG CCCCCATCCC
GGCCTTCCCC CGGCGGGGGA AGGAGCAAGA CAGGGCGAAG CCCAGGCCCT CAAACTCCTC
TTCGAAGAAA TCACCACCCG CCTGCGCTAC CTGCACGACG TCGGCATCGG CTACCTCACG
CTCGACCGGC AAAGCCGCAC GCTGTCGGGC GGCGAGGTGC AGCGGATCAA TCTCACCACC
GCGCTCGGCA CCTCGCTGGT CAACACGCTG TTCGTGCTCG ACGAGCCCAG CATCGGCCTG
CATCCGCGCG ACATGAACCG CATCACCGAG GCCATGCTGC GCCTGCGCGA TGCGGGCAAC
ACGCTGGTGG TGGTCGAGCA CGACCCGGCC GTGATGCTCG CGGCCGACCG CGTGATCGAC
ATGGGCCCCG GCCCCGGCAT CCGCGGCGGG CAGATCGTGT TCGACGGCAG CACCGACCAG
CTGCGCGATG CCGACACGCT CACCGGCCAG TACCTGGGCG GGCGCAAGAA GATCGGCATG
GGCTTCAAGC GGCTCGTGAG CGAGAACACG CACCGGCTCA TCCTCGAAGG CGTGCGCGAG
CACAACCTCA AGAACATCAC GGTCGAGTTT CCGCTCGCGC GGCTGGTCTG CGTGACCGGC
GTCAGCGGCT CGGGCAAGTC GACGCTGATC CAGGACGTGC TGGCGCCCGC GCTCATGCGC
CACTTCGGCA AGGCCACCGA AACGCCGGGC GCGCACGACC GCCTGCTGGG CGCCGATCAC
CTGGGCGACG TGGTCTTCGT CGACCAGTCG CCGATCGGCA AGACCGCGCG CTCCAACCCC
GCGAGCTACG TGGGCGCATG GGACGCGATC CGCGAGATCT TCGCCACCGC CGCGCTCTCG
CGCCAGCGCG GCTACACCGC GAGCAAGTTC AGCTTCAACT CCGGCGACGG CCGCTGCCCG
ACCTGCGGCG GCTCGGGCTT CGAGCACGTC GAGATGCAGT TCCTCTCGGA CGTGTACCTG
CGCTGCCCCG ACTGCGACGG CAAGCGCTAC CGCCCCGAGA TCCTCGAGGT GAAGGTCGAG
CGCAAGGGCC GGAGCTACAA CGTGGCCGAC GTGCTGGACC TCACCGTGGC CGAAGCCGCG
GCGGTGTTCG AGGCCGACCG CGACGTGCTG CGCGTGCTGC AGCCGATCTC CGACGTGGGG
CTCGACTACG TCAAGCTCGG CCAGCCCGTG CCCACGCTGA GCGGCGGCGA GGCCCAGCGC
CTCAAGCTCG CGGGCTTCCT GGCCGAGGCG GCCAAGAGCG CAACGGCCAG CAAGCAATCG
GTCGCGCGCC GAGGCACGCT GTTCCTGTTC GACGAGCCCA CCACCGGCCT GCACTTCGAC
GACATCGCGC GGCTGATGCG CGCGCTGCGC AAGCTGCTCG ACGCCGGCCA TTCGCTGATC
GTGATCGAGC ACAACCTCGA CGTGATCCGC GCCAGCGACT GGTGCATCGA CCTCGGCCCC
GAAGGCGGCG ACGGCGGCGG CCGGGTGGTG GCCGAGGGCA CGCCCGAGCA GCTGCGCGAG
AACCGCGCCT CGCTCACCGG CGCGGCGCTG GCCGACTACG ACCTGGCCAT CGGCCCCGAG
GCCTACAAGG TGGCCGAGCG CGCCGCGCGG CGCTACATCG CCAATGCCAA GACGGCGCCG
GGCGGCCATG CGATCGAGAT CGTCAACGCG CGCGAGCACA ACCTGAAGAA CCTCAGCGTG
AACATTCCGC GCGGCAAGTT CAGCGTGGTG ACGGGCGTGA GCGGCTCGGG CAAGTCGACG
CTGGCCTTCG ACATTTTGTT CAACGAAGGG CAGCGGCGCT ATCTCGAATC GCTCAACGCC
TATGCGCGCA GCATCGTGCA GCCCGCGGGC CGGCCTGAAG TGGATGCGGT CTACGGCATT
CCGCCCACGG TGGCCATCGA GCAGCGCCTC TCGCGCGGCG GCCGCAAGAG CACGGTGGGC
ACCACCACCG AGGTCTGGCA CTTCCTGCGC CTCCTGTACG TGAAGCTCGG CATCCAGCAC
TGCATCCACG ACGGCGCGGC GGTGCAGCCG CAGACGCCCG ACAGCATCGC GGCGCAGCTG
ATGCGCAACT TCAAGGGCCA GCACATCGGC CTGCTCGCGC CGCTGGTGAG CAACCGCAAG
GGCGTGTACA CCGAGCTGGC CGACTGGGCG CGGCCGCGCG GCTTCACGCA CCTGCGCGTG
GACGGCGACT TTTTGCCGAC CACCGGCTTT CCGCGCATCG ACCGCTTCAA GGAGCACAGC
ATCGAGCTGC CGGTGGCCAG CCTCGACGTG CTGCCCTCGA AGGAGACCGA GCTGCGCGAG
GCGCTCACCA AGGCGCTCGA ACACGGCAAG GGCGTGGTGC ATGTGCTGAG CCAGCTCGAC
GGCCTCAAGG CCGCGATGAT GGCCGGCGCA CCGGCCTCGG GCATCGGCCG CGTCAACGTG
TTCTCCACGC TGCGCGCCTG CCCGGTCTGC AGCACCAGCT ACGCAGAGCT CGATCCGCGC
CTGTTCAGCT ACAACAGCAA GCACGGCTGG TGCCCCGACT GCGTGGGCAC CGGCGTCAAG
CTCAGCAAGG ACCAGCGCAA GGTCTTCGAC GACTCGATCC GCGACGACGA CAACAAGGGC
CGCGAGCAGA CCTTCGCCGA GCCCGAGATC GAAGACCTGG CCGACACCGC CTGCCCGACC
TGCGAAGGCA CGCGGCTCAA TGCCACGGCG CGCGCGGTGG GCTTCGGCGC ATCCGTCGCC
GACGGCATGG GCGGCATCGG CATCACCGAG CTCGCGCGCA TGAGCGTGAC CGAGGTGCGG
CAGTGGTTCG AAGGCCTGGC GCTCACGGGC CGCGAAGCCG AGATCGCGCG CGACCTGGTG
CCCGAGATCA GGAGCCGGCT CGAATTCCTC GAAGAAGTGG GCCTGGGCTA CCTCACGCTC
GACCGCGGCG CGCCCACGCT GAGCGGCGGC GAGGCGCAGC GCATCCGCCT GGCCGCGCAG
CTCGGCAGCA ACCTGCAGGG CGTGTGCTAC GTGCTCGACG AGCCGACCAT CGGCCTGCAT
GCACGCGACA ACCAGATCCT GCTGGACGCG CTGCACAAGC TCGGCGACAA GGGCAACACG
CTGGTGGTGG TGGAGCACGA CGAAGACACC ATCCGCCGCG CCGACCACAT CATCGACATC
GGCCCGAGCG CCGGCAAGCG CGGCGGCCGC CTCGTGGCCG AGGGCTCGGT CGCCGACATC
CAGAAGGCGG GCGATTCGCA GACCGGGCGC TACCTGCGCG ATGCGATCAA GCATCCCTTG
CACGAACGGC GATTGGTTCC TCTCCCTCCC CTTCCGGGGG AGGGCCGGGG AGGGGGCACG
ACGGCCTCGA AGAAGACCGC TGGCCGTGCA AACGCCGCGA GCCCCCACCC CAACCCTCCC
CCGGGAGGGG AGGGAGCGAG TGCCAATGCC TGGCTCACGG TGCACGGCGC CGATCTGCAC
AACCTGCAGG ACGTGACCGC CACGCTGCCG CTGCACCGCC TGGTGGTGGT GACCGGCGTG
AGCGGCTCGG GCAAGTCCAC GCTCGCGCGC GACGTGCTGC TGGCCAGCGT GCATGGCATC
GTGGTCCAGC GCATGACCAA GGCCGGCCGC GACGCCGACG CCGCGGGCAA GCGCCCGGCC
TGGTCCGGCT GCGACCGCGT CGAAGGCTAC GAGAGCATCG ACCGCGTGCT CGAGGTCGAC
CAGACCCCCA TCGGCAAGAC GCCGCGCAGC TGCCCGGCCA CCTACATCGG CTTCTGGGAC
ACCATCCGCA AGCTGTTCGC CGACACGCTC GAAGCCAAGG CGCGCGGCTA CGGCCCGGCC
CGCTTCAGCT TCAACACCGG CGAAGGCCGC TGCCCCGGCT GCGACGGCGC GGGCGTGCGC
ACCATCGAGA TGAGCTTTTT GCCCGACGTG AAGGTGCCCT GCGAGGTCTG CCATGGCGCG
CGCTTCAATC CCGAAACGCT GGCCGTGAGC TGGCGCGGCA AGAGCATCGG CGAGGTGCTG
CAGATGGAAG TGGACGAGGC GGTCGAGTTC TTCGCGGCCA TGCCCAACAT CAGCCATCCG
CTGCAGCTGC TGAAGGACGT GGGGCTGGGC TACCTCACGC TGGGCCAGCC CTCGCCCACG
CTCTCGGGCG GCGAGGCGCA GCGCATCAAG CTGGTGACCG AGCTCAGCAA GGTGCGCGAC
GACGTCACGC GCCGCGGCCA GAAGGCGCCG CACACGCTGT ACGTGCTCGA CGAGCCGACC
GTGGGCCTGC ACATGGCCGA CGTCGAGAAG CTGATCCACG TGCTGCACCG GCTGGTGAAC
GGCGGCCACA GCGTGGTGGT GATCGAGCAC GACCTCGACC TGATCGCCGA GGCCGACTGG
ATCATCGACC TCGGGCCCGA GGGCGGCAAC GCCGGCGGGC GCATCGTGGC CGCGGCGCCG
CCGGAGGAAG TGGTGCGGCT CGGCACGCAC ACCGGCGTGG CCCTGGCGCC GGTGCTGGCG
CGGTAG
|
|---|
| Protein sequence | MTQGSIRIRG ARQHNLQNLD LDIRTGEMTV VTGPSGSGKS SLVFDTLYAE GQRRYVETFS
AYARQFLDRM DKPAVDKVEG VPPAIAIDQT NPVRSSRSTV GTMTELNDHL KLLYARAAQL
FDRETALPVR HDSPDSIYAQ IAERAAAAGD PRLVVTFPVE LPAGTSADEV TQWLSASGFT
RVQAEREVAT PTGPRKMLDV VADRFRISSA ERARVVEAIE VALKRGSGRV TVHATGADEN
APTDVWKFST GLHCPESDIR YADPIPSMFS FNSAVGACDT CRGFGRVIGV DLGLVIPNDR
LTLRAGAIKT IQTPAWKEAQ DDLMRHAEAA GIPRDTPWNK LTDEQKHWVI EGTPNYKEGN
WNKQWYGVRR FFAYLESKAY KMHIRVLLSK YRSYTPCPTC SGARLKLDSL IWRIGSKEDA
DAVLEPAKRF MPAGVKWTRA QLEALPGLCL HDLMLLPIER LRRFFDRMGL APSPAGGGQG
WGHAASAKAV AVVEAESPHP GLPPAGEGAR QGEAQALKLL FEEITTRLRY LHDVGIGYLT
LDRQSRTLSG GEVQRINLTT ALGTSLVNTL FVLDEPSIGL HPRDMNRITE AMLRLRDAGN
TLVVVEHDPA VMLAADRVID MGPGPGIRGG QIVFDGSTDQ LRDADTLTGQ YLGGRKKIGM
GFKRLVSENT HRLILEGVRE HNLKNITVEF PLARLVCVTG VSGSGKSTLI QDVLAPALMR
HFGKATETPG AHDRLLGADH LGDVVFVDQS PIGKTARSNP ASYVGAWDAI REIFATAALS
RQRGYTASKF SFNSGDGRCP TCGGSGFEHV EMQFLSDVYL RCPDCDGKRY RPEILEVKVE
RKGRSYNVAD VLDLTVAEAA AVFEADRDVL RVLQPISDVG LDYVKLGQPV PTLSGGEAQR
LKLAGFLAEA AKSATASKQS VARRGTLFLF DEPTTGLHFD DIARLMRALR KLLDAGHSLI
VIEHNLDVIR ASDWCIDLGP EGGDGGGRVV AEGTPEQLRE NRASLTGAAL ADYDLAIGPE
AYKVAERAAR RYIANAKTAP GGHAIEIVNA REHNLKNLSV NIPRGKFSVV TGVSGSGKST
LAFDILFNEG QRRYLESLNA YARSIVQPAG RPEVDAVYGI PPTVAIEQRL SRGGRKSTVG
TTTEVWHFLR LLYVKLGIQH CIHDGAAVQP QTPDSIAAQL MRNFKGQHIG LLAPLVSNRK
GVYTELADWA RPRGFTHLRV DGDFLPTTGF PRIDRFKEHS IELPVASLDV LPSKETELRE
ALTKALEHGK GVVHVLSQLD GLKAAMMAGA PASGIGRVNV FSTLRACPVC STSYAELDPR
LFSYNSKHGW CPDCVGTGVK LSKDQRKVFD DSIRDDDNKG REQTFAEPEI EDLADTACPT
CEGTRLNATA RAVGFGASVA DGMGGIGITE LARMSVTEVR QWFEGLALTG REAEIARDLV
PEIRSRLEFL EEVGLGYLTL DRGAPTLSGG EAQRIRLAAQ LGSNLQGVCY VLDEPTIGLH
ARDNQILLDA LHKLGDKGNT LVVVEHDEDT IRRADHIIDI GPSAGKRGGR LVAEGSVADI
QKAGDSQTGR YLRDAIKHPL HERRLVPLPP LPGEGRGGGT TASKKTAGRA NAASPHPNPP
PGGEGASANA WLTVHGADLH NLQDVTATLP LHRLVVVTGV SGSGKSTLAR DVLLASVHGI
VVQRMTKAGR DADAAGKRPA WSGCDRVEGY ESIDRVLEVD QTPIGKTPRS CPATYIGFWD
TIRKLFADTL EAKARGYGPA RFSFNTGEGR CPGCDGAGVR TIEMSFLPDV KVPCEVCHGA
RFNPETLAVS WRGKSIGEVL QMEVDEAVEF FAAMPNISHP LQLLKDVGLG YLTLGQPSPT
LSGGEAQRIK LVTELSKVRD DVTRRGQKAP HTLYVLDEPT VGLHMADVEK LIHVLHRLVN
GGHSVVVIEH DLDLIAEADW IIDLGPEGGN AGGRIVAAAP PEEVVRLGTH TGVALAPVLA
R
|
|---|
| |