| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4682 |
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| Symbol | |
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| ID | 7972893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4970432 |
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| End bp | 4971223 |
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| Gene Length | 792 bp |
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| Protein Length | 263 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795267 |
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| Product | ribosomal RNA methyltransferase RrmJ/FtsJ |
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| Protein accession | YP_002946553 |
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| Protein GI | 239817643 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1189] Predicted rRNA methylase |
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| TIGRFAM ID | [TIGR00478] hemolysin TlyA family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.558879 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCGCCG ACCAATTGCT GGTGGAGCGC GGCCTGGCCG CGTCGCGTTC GCAGGCCGTG
CGGCTGATTG CCGGCGGCAT GCGCTGGCGC GATGCGGGCA GCGCGGACGC GTGGCGCTCG
GTGGTGAAGA ACCGCGACGA GGTGCCCGAG TCCGCCGAGG TCGAGCTCGA CGACGCGGCC
GAGGCGCGCT ACGTCTCGCG CGGCGGGCTC AAGCTCGAAG GCGCGCTGGC GGCGAGCGGC
GTCAGCGCCG CCGGCAAGCT GTGCCTCGAC GTGGGCCAGT CGACCGGCGG CTTCACCGAC
TGCCTGCTGC AAGCCGGCGC GGCCAAGGTG GTGGGCGTCG ACGTCGGCCA CGGGCAGCTG
CATCCGAAGC TGCGCGAGGA CGAGCGCGTG GTGGCCATCG AAGGCGTCAA TGCGCGTGCG
TTGTCGCCGG ACGACCTGCA GGAAGAAGAA GGCGAAGCGC CTTCCGACCT GCGCTTCGAC
CTGATCGTCG GCGACCTGTC GTTCATCTCG CTCACGCTGG TGCTGCCGGC CGTGGTGCCG
TTCCTGGCCG GCGACGGCCA GCTGCTGATG CTCGTCAAGC CGCAGTTCGA GCTGCAGCCG
GGGCAGGTCG GCAAGGGCGG CATCGTGCGC GACGCGTCGA TGTACGCGGT GGTCGAGAAG
CGCCTGCGCG ACGCCTGCGA GGCGCTCGGG CTGCGCGTGC TGCGGTGGTT CGACAGCCCG
ATTGCGGGCG GCGACGGCAA CCGCGAGTTT TTCATTCACG CCGTTCGCGC GGACACTGCG
AACGGTTCCT AG
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| Protein sequence | MRADQLLVER GLAASRSQAV RLIAGGMRWR DAGSADAWRS VVKNRDEVPE SAEVELDDAA
EARYVSRGGL KLEGALAASG VSAAGKLCLD VGQSTGGFTD CLLQAGAAKV VGVDVGHGQL
HPKLREDERV VAIEGVNARA LSPDDLQEEE GEAPSDLRFD LIVGDLSFIS LTLVLPAVVP
FLAGDGQLLM LVKPQFELQP GQVGKGGIVR DASMYAVVEK RLRDACEALG LRVLRWFDSP
IAGGDGNREF FIHAVRADTA NGS
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