Gene Vapar_4680 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4680 
Symbol 
ID7972891 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp4968909 
End bp4969508 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content73% 
IMG OID644795265 
Productrare lipoprotein A 
Protein accessionYP_002946551 
Protein GI239817641 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0797] Lipoproteins 
TIGRFAM ID[TIGR00413] rare lipoprotein A 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.173644 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCGCCGG CCACCGAGGG CGGGCCGGCC GACAAGGAGG ACGCCAAGCT GCTGCCCCTG 
CCGCGCAAGC TGGCGGTGCC GCCGGGCGCC CCGGCCCGCT CGAGCGTGCC TTCGGTGCGC 
TACGACCTCG CGGTATCGGG AATTGGCGAG GCCGACGACG GCGTGCCCGG GGACAGCGGC 
CCGCGCGAGA TCTTCGAGCG CGGCGGGGCC TCGTGGTACG GCATCCAGTT CCACCAGCGC 
AAGACCGCGA GCGGCGAGCG CTTCGACATG ATGGCCATGA CGGCGGCCCA CAAGACCTTG 
CCGTTCAATA CCCGCGTTTG CGTGCGCAGC CTCGTCAACG GCAGCGAGGT GCTGGTGCGC 
ATCACCGACC GGGGGCCCTA TGCGCAGGGC CGCATCATCG ACCTGAGCCG CGGCGCGGCC 
GAGCGCATCG GGCTGATCGG GCTCGGCATC AAGCAGGTGG CGCTGACGAT CATCGACCGC 
GAGGGCATGC GCTGCGGCGG CTCCGAGGTG GAGGAAGACG TGGCGCAGGC CCAGGCGCCG 
GCGGCTGCGC CCGCACCCGC GCGCCGCCAG GTGAAAGTGC CACAGCGCCG CCGCCGCTGA
 
Protein sequence
MPPATEGGPA DKEDAKLLPL PRKLAVPPGA PARSSVPSVR YDLAVSGIGE ADDGVPGDSG 
PREIFERGGA SWYGIQFHQR KTASGERFDM MAMTAAHKTL PFNTRVCVRS LVNGSEVLVR 
ITDRGPYAQG RIIDLSRGAA ERIGLIGLGI KQVALTIIDR EGMRCGGSEV EEDVAQAQAP 
AAAPAPARRQ VKVPQRRRR