Gene Vapar_4667 details

Gene Information

• Locus tag: Vapar_4667
• ID: 7972878
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 4957776
• End bp: 4958234
• Gene Length: 459 bp
• Protein Length: 152 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644795252
• Product: protein of unknown function UPF0054
• Protein accession: YP_002946538
• Protein GI: 239817628
• COG category: [R] General function prediction only
• COG ID: [COG0319] Predicted metal-dependent hydrolase
• TIGRFAM ID: [TIGR00043] metalloprotein, YbeY/UPF0054 family

Plasmid Coverage information

• Num covering plasmid clones: 24
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCATTGC CCGCACTGTC CCTTTCGCTG CAGTTCGCGC GCTTCAAGGG CGTCGAACGG 
CACCGCGCCG CGCTGCCGCG CCACAGCGTC ACGCGCTGGA TCCGCCATGC ACTCGAGATC 
GACGCGGAGA TCACGGTGCG CATCGTCGAT GCCGAGGAAG GCCAGCGCCT GAACCGCGAG 
TTCCGCGGCA AGGACTACGC GACCAACGTG CTGACCTTCG ACTACACCCA GAGCCCGATG 
GTGATGGCCG ACCTGGTGCT GTGCGCGCCG GTGGTCGCGA GCGAGGCGAA GGAGCAGCGC 
AAGACCCTGG CCGCGCATTA CGCGCACCTG CTGGTTCACG GCACCCTGCA TGCGCAAGGC 
TGGGACCACG AGACCGGCGA GGCCGACGCC GAGGCCATGG AAGCGCGCGA GATCGAGATC 
CTCGCAGGCC TCGGCATCCG CAATCCGTAC GGCCGCTGA 

 

Protein sequence

MALPALSLSL QFARFKGVER HRAALPRHSV TRWIRHALEI DAEITVRIVD AEEGQRLNRE 
FRGKDYATNV LTFDYTQSPM VMADLVLCAP VVASEAKEQR KTLAAHYAHL LVHGTLHAQG 
WDHETGEADA EAMEAREIEI LAGLGIRNPY GR