| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4659 |
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| Symbol | |
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| ID | 7972870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4950363 |
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| End bp | 4952135 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795244 |
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| Product | alpha/beta hydrolase fold protein |
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| Protein accession | YP_002946530 |
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| Protein GI | 239817620 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG2267] Lysophospholipase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGATA CAAGCACCCA TCCACAACGC AGTCCGCAGG AGCGCCAGTT CCGCACGCAC
GACGGCGAAT CGCTCTTCTA CCGGCACTGG CCGGCCACCG GCGGCGCGCG GCGCGGCGCG
ATCGTGCTGT TCCACCGCGG CCACGAGCAC GGGGCGCGCA TGGCGCACCT GGTCGACGAG
CTCGGCCTGC CCGACTTCGA CTTCTTCGCC TGGGACGCGC GCGGCCACGG CCGCTCGCCG
GGCCAGCGCG GCTACAGCCC GAGCTTTGCC ACCTCGGTGC GCGATGTGCA GACCTTCATC
CAGCACATCG GCAGCGCGCA CGGCGTGCCG GAGCACGACA TCCACGTGAT TGCGCAGAGC
GTGGGGGCCG TGCTGGTTTC CACCTGGGCG CACGACTACG CGCCCAAGGT GCGCGGGCTC
ACGCTGGCCT CGCCGGCCTT CAAGGTGAAG CTCTACGTGC CCTTTGCACG CGCCGGGCTC
GGGCTGATGC ACAAGCTGCG CGGCCTGTTC TTCGTCAACA GCTATGTGAA GGCGAAGTTC
CTCACGCACG ACCCCGAGCG CATCGCGAGC TACGAGAGCG ATCCGCTGAT CTCGCGGCCC
ATCGCGGTCA ACATCCTGCT CGGCCTGTAC GAAGCCGCCG ACCGCGTGGT GGCCGACGCC
AACGCCATCA CGCTGCCGGT GCAGCTGCTG ATCTCGGGCT CGGACTGGGT GGTGCACCAC
AAGCCGCAGC ACCAGTTCTT CGAGCGGCTG GGCAGCGCCG TCAAAACCAA GCTCGAGCTG
CCGGGCTTCT TCCACGACAC GCTGGGCGAG AGGGACCGCG CGCCGGCGGT GCAGGCAATC
CGCGAATTCA TCCTGCAGCT GTTCGACCAG CCGCCCGCGC CGGTCGACCT GCGCGCCGCG
CACCTGGCTG GCAACACCGC CGACGAATCG CGTGCGCTGG CCGAGCCGCT GGCGCCGCTC
TCGCTGCGCG GCGCCTACTG GGGCATGACG CGCGCCAGCC TGCGCCTGGG CGGTGTGCTC
TCGCGCGGCG TGAAGCTCGG GCACGACACC GGCTTCGATT CGGGCAGCAC GCTCGACTAC
GTCTACCGCA ACGAGCCGAA GGGCAAGGGC GCGCTGGGCC GCTCCGTCGA CAAGACCTAC
CTGAACTCGA TCGGCTGGCG CGGCATCCGG CAGCGCAAGA TCCACGTCGA GGAGCTGATC
CGCATCGCGA TGGAGCGCCT GGCCGAGATG CACCGCGAAG TGCGCGTGAT GGACATCGCG
GCTGGCCATG GCCGCTACGT GCTCGACGCG GTGCTTGCGA GCCCCGTCAA GGCCAGCTCG
ATCCTGCTGC GCGACTACAG CGACATCAAC GTGCGCGACG GCCGCGCGCT GATTGCCGAG
AAGGGCCTGG AAGACGTGGC GCAGTTCGTG CAGGCCGACG CCTTCGACCG CATCAGCCTG
GCCACCGTGA CGCCGCGCCC CACGCTCGCA GTGGTGTCGG GCCTCTACGA GCTGTTCCCC
GACAACGAAA TGGTGCGGCG CTCGCTCGCG GGCGTGGGCG ATGCGGTGGA AGACCGCGGC
TACCTGGTCT ACACCGGCCA GCCCTGGCAT CCGCAGCTCG AGATGATTGC GCGCGCGCTC
ACCAGCCATC GCCAGGGCGA AGCCTGGGTG ATGCGCCGCC GCACGCAGGC CGAGATGGAC
CAGCTGGTGG AGGAAGCGGG CTTCCGCAAG ATCGACCAGC GCATCGACGA ATGGGGCATC
TTCACCGTCT CGCTCGCGGT GAGGGTCGCG TGA
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| Protein sequence | MTDTSTHPQR SPQERQFRTH DGESLFYRHW PATGGARRGA IVLFHRGHEH GARMAHLVDE
LGLPDFDFFA WDARGHGRSP GQRGYSPSFA TSVRDVQTFI QHIGSAHGVP EHDIHVIAQS
VGAVLVSTWA HDYAPKVRGL TLASPAFKVK LYVPFARAGL GLMHKLRGLF FVNSYVKAKF
LTHDPERIAS YESDPLISRP IAVNILLGLY EAADRVVADA NAITLPVQLL ISGSDWVVHH
KPQHQFFERL GSAVKTKLEL PGFFHDTLGE RDRAPAVQAI REFILQLFDQ PPAPVDLRAA
HLAGNTADES RALAEPLAPL SLRGAYWGMT RASLRLGGVL SRGVKLGHDT GFDSGSTLDY
VYRNEPKGKG ALGRSVDKTY LNSIGWRGIR QRKIHVEELI RIAMERLAEM HREVRVMDIA
AGHGRYVLDA VLASPVKASS ILLRDYSDIN VRDGRALIAE KGLEDVAQFV QADAFDRISL
ATVTPRPTLA VVSGLYELFP DNEMVRRSLA GVGDAVEDRG YLVYTGQPWH PQLEMIARAL
TSHRQGEAWV MRRRTQAEMD QLVEEAGFRK IDQRIDEWGI FTVSLAVRVA
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