Gene Vapar_4658 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4658 
Symbol 
ID7972869 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp4949717 
End bp4950319 
Gene Length603 bp 
Protein Length200 aa 
Translation table11 
GC content72% 
IMG OID644795243 
ProductCDP-alcohol phosphatidyltransferase 
Protein accessionYP_002946529 
Protein GI239817619 
COG category[I] Lipid transport and metabolism 
COG ID[COG0558] Phosphatidylglycerophosphate synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCGATCT ACGAACTGAA ACCCCGGTTC CAGGGCCTGC TGCGGCCGCT CGTGGGGCGC 
CTGCATGCCA TGGGCGTCAC CGCCAACCAG GTCACGCTGG CCGCGTGCGT GGTTTCGGTC 
GCGCTCGGGC TCTGGCTTTT CTTTGCGGCG CCGTCGCCGG CTGCCTTCGG GCTGATCCCG 
GCCTGGATGT TCGTGCGCAT GGCGTTCAAC GCGATCGACG GCATGCTGGC GCGCGAGCAC 
GGCCAGCAGA GCAAGCTCGG CGCCTTCCTC AACGAACTGA CCGACGTGGT GTCCGACGCC 
GCGCTGTACC TGCCGTTTGC GCTGGTGCCG CCGTTCAGCC CGTTCTGGAT CGGCACGGTG 
ATCGTGCTGG CGGGGCTGAG CGAATTCGCG GGCGCGCTGG GCCCCACGGT GGGCGCCTCG 
CGCCGCTACG ACGGGCCGCT CGGCAAGAGC GACCGCGCCT TCGTGTTCGG CGCGCTCGGT 
CTCTATGTGG CGCTGGGCTG GCCGCTGCCG GGCTGGGCGG CATGGCTGAT GCCGCTGGCC 
GCGGCGCTCG TGGCCTGGAC GGTGGCCAAC CGCGTGCGCC GCGCACTGGC CGAGGCGGCG 
TAG
 
Protein sequence
MSIYELKPRF QGLLRPLVGR LHAMGVTANQ VTLAACVVSV ALGLWLFFAA PSPAAFGLIP 
AWMFVRMAFN AIDGMLAREH GQQSKLGAFL NELTDVVSDA ALYLPFALVP PFSPFWIGTV 
IVLAGLSEFA GALGPTVGAS RRYDGPLGKS DRAFVFGALG LYVALGWPLP GWAAWLMPLA 
AALVAWTVAN RVRRALAEAA