| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4637 |
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| Symbol | |
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| ID | 7972847 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4927101 |
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| End bp | 4928720 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795221 |
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| Product | ABC transporter related |
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| Protein accession | YP_002946508 |
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| Protein GI | 239817598 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1129] ABC-type sugar transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGCCG GCCTTGCCGT CCCCGTGCTC TCGCTGAGCG CGCTCGGCAA GGACTATGCG
GCGCCGGTGC TCGACGACGT CTCGCTGGTG CTGAATGCCG GCGAGGTGCT CGCGCTCACG
GGCGAGAACG GCGCGGGCAA GAGCACGCTG TCGAAGATCG TCTGCGGTCT GGTGCAGCCC
ACGCGCGGGC AGATGCTGCT GGGCGGCGCC GCGTTCCAGC CTGCTTTCCG CCGCGACGCC
GAGCGGCTGG GCGTGCGCAT GGTCATGCAG GAACTGGGGC TGGTCACCAC GCTGTCGGTG
GCCGAGAACC TGCTGCTCGA CCGGCTGCCC AACCAGACCG GCTGGATCCG CCGCGGCAAG
CTGCACGATC TGGCCGCGCG CCAGCTCGCG AAGATCGGCA TGGAGCACAT CGACCCGGCC
ACGCCGGTGG CGCGGCTGGG CATCGGCCAG CAGCAGATGG TGGAGATTGC GCGCAACCTG
CAGGACGACA CGCGCGTGCT GGTGCTCGAC GAGCCCACCG CCATGCTCAC GCCGCGCGAG
ACCTCGCACC TGTTCGAGCA GATCGAGCTG CTGAAGGCGC GCGGCGTGGC CATCATCTAT
GTGTCGCACC GGCTCGAGGA GCTGCAGCGC ATTGCCGACC GCGTGGCGGT GCTGCGCGAC
GGCCGGCTGG TGGACGTGCG CGCCATGGCC GGCGTGCGCG AAGCCGAGCT GGTGCAGCGC
ATGGTGGGCC GCGCGGTGCA CGAGCATGAA GGCCGCGACC GCCGCATCGC CGGGCCGGTG
CTGCTGAGCG CGCGCGGCAT CGGCCGGGCC GAGGCCGTGA AGGACGTCGA CATCGACCTG
CACGCGGGCG AAGTCATGGG CCTGGCGGGC CTGGTCGGCT CCGGCCGGAC CGAACTCGTG
CGCCTGCTGT TCGGCGCCGA CCGCGCCGAC CGCGGCGAAA TTCTTCTCTA CGACGGCATT
GCCGCCACGC AGCCGGTGCT GCGCGTGCGC AAGGGCTGGC GCTCGCCGAT GCAGGCCATC
CGCGCCGGCA TCGGCCTGGT GACCGAAGAC CGCAAGTCGC AGGGGCTGCT GCTCACGCAA
TCGATCCGCG TCAATGCCAC GCTGAGCGAC CTGGGCGCCA TCTCGCACGC CGGCTGGCTG
CAGCGCGCCA AGGAGCGCGG CATTGCGAGG CGCCTGGTGG AGCTGCTGCG CATCCGCTCG
CGCAGCATCG AGCAGCCCGT GGCCACGCTG AGTGGCGGCA ACCAGCAGAA GGTGGTGTTC
GCGCGCTGGC TGCACCGCGA ATGCAAGGTG CTGCTGCTCG ACGAGCCCAC GCGTGGCGTG
GACGTGGGCG CGCGCGCCGA CCTGTACGCC GAGCTCGACC GCATGACCGA CGCCGGCAAG
GCGCTCCTGA TGGTGTCGAG CGACCTGCGC GAACTCATGG CCATGTGCGA CCGCATCGGC
GTGATGAGCG CCGGCCGGCT GGTCGCGGTG TTCGAGCGCG GCCAGTGGAG CGAGCAATCG
CTGCTGGCCG CCGCCTTCAG CGATGCGGCA GGCCGCGCCG CCAGCGCGGC AACCCCCACG
GCGGGCTCCG CCATTTCCGA TCCGAATCCG GGCCAACCGG CCACCGCCGA CACACCATGA
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| Protein sequence | MNAGLAVPVL SLSALGKDYA APVLDDVSLV LNAGEVLALT GENGAGKSTL SKIVCGLVQP
TRGQMLLGGA AFQPAFRRDA ERLGVRMVMQ ELGLVTTLSV AENLLLDRLP NQTGWIRRGK
LHDLAARQLA KIGMEHIDPA TPVARLGIGQ QQMVEIARNL QDDTRVLVLD EPTAMLTPRE
TSHLFEQIEL LKARGVAIIY VSHRLEELQR IADRVAVLRD GRLVDVRAMA GVREAELVQR
MVGRAVHEHE GRDRRIAGPV LLSARGIGRA EAVKDVDIDL HAGEVMGLAG LVGSGRTELV
RLLFGADRAD RGEILLYDGI AATQPVLRVR KGWRSPMQAI RAGIGLVTED RKSQGLLLTQ
SIRVNATLSD LGAISHAGWL QRAKERGIAR RLVELLRIRS RSIEQPVATL SGGNQQKVVF
ARWLHRECKV LLLDEPTRGV DVGARADLYA ELDRMTDAGK ALLMVSSDLR ELMAMCDRIG
VMSAGRLVAV FERGQWSEQS LLAAAFSDAA GRAASAATPT AGSAISDPNP GQPATADTP
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