Gene Vapar_4603 details

Gene Information

• Locus tag: Vapar_4603
• ID: 7973301
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 4883092
• End bp: 4888695
• Gene Length: 5604 bp
• Protein Length: 1867 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644795187
• Product: outer membrane adhesin like proteiin
• Protein accession: YP_002946474
• Protein GI: 239817564
• TIGRFAM ID: [TIGR01965] VCBS repeat

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.873009
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAGCTG TTTACAAGTC TGGTGGCGCA TCCCGCAAAG CGGCGGCAGA CACCCCTCTG 
GTTCTGGATC GCCCATCGAT CGTCTCGCTG AAGATCGCGC CCGAGAGCGT GCTCAAGTTC 
GAGCGTCGCG GCGGCGACCT CGTGCTCGTG TTGCAGGGCG GCCAGGAAGT CGCCGTGCGC 
GGCTTCTTCG CCGAGTACCC TGACGGCGGC CGCAACGACC TCGTGCTCGA AGACGGCGCC 
GGCGTGCAGT GGTGGGGCCA GTACACCGCG CCCTGGAAAG ACTTTCACTT CACCGAAATC 
GAATGGACCG ACGCCGGCGC CGCGCTACTG CCCGACGGTG TGCCCGGCTG GCTGCTGGGT 
GCGCTCGGCG TGCTGGGCGT CGGTGCCGCC GCGAGCGGTG GTGGTGGTGG CGGCGGCGGT 
GGCGGCCCGG CCTTCATCCC GCCGCTGCTC CCGCCGCAGA ACCGCGGCCC CGAAGGCAAG 
GCCGAGCCCG TCGTCACCGG GCAGGACAAG CCCGTTGCCG GGCAAGTGCA GGCCGCCGAC 
CCGGACCGCG ACACGCTGAA CTTCACCGTC GCCAAGGGCC CCGAGCACGG CACCGTCACC 
GTCGACCCGT CCACCGGCCA GTTCCTCTAC ACGCCCAACC CCGGCTACGA AGGGTCCGAC 
AGCTTCGAAG TGACCGTCAG CGACGGCAGG GGCGGCACCA CCACCGTGAA GGTGCCCGTG 
ACCGTCTCGC CCGTCAACGA CGCGCCCACG GCGCCCGACT ACACCGAGAC CACGAACGAA 
GACACGCCCG TGAGCGGCCG CGTGACCGGC AGCGACATGG ACAGCGGCGA CACGCTGACC 
TACGCGAGGG GCAGCGATCC GTCGCATGGC ACCGTGACAG TCAACCCGGA CGGCACGTAC 
ACCTACACGC CCAACCCGGA CTTCAACGGC ACGGACAGCT TCACCGTCAC GGTGAGCGAC 
GGCCACGGTG GCACGACCAC CAGCACCGTG ACCGTGACCA TCAACCCCGT CAACGACGCC 
CCTGTGTTCG TCGACGGCGG TGGCACCCCG GTGAACACGA CGGACGGCTA CGTCTTCGGC 
TACGACGAGA ACCGTCCTGC AGGCACCGTG CTCGGCACCG TCCACGCTAC GGACGTCGAC 
AGCGCGACCG TCACCTACAG CATCCTCTCG GGCAACGACA ACGGCTACTT CGCCATCGAC 
CCGGTCACGG GCGAGATCAG CCTCACGCCG GCGGGCGCTG CGGCGTTCGC GAACGACTAC 
GAGGCGGGCG CCAACGCCCA CGCGCTGGTG GTCGGCGCGA ACGACGGCAC GGTCACCACG 
TCCATCCCCG TCACGCTCAA CGAGCAGAAC CTCAACGAAG CGCCGACGGC GCCCGACGAC 
ACCAAGACGA CGAACGAAGA CACGCCCGTC AGCGGCCAGA TCATCGGAAG CGATGCTGAT 
GGCGACACGC TGACCTACGT GAAGGGCAGC GACCCGGCCC ATGGCACGGT CACGGTCAAC 
GCCGACGGCA CGTACACCTA CACGCCCGGT GCCAACTTCA ACGGCACCGA CAGCTTCACC 
GTCACGGTGA GCGACGGCCA TGGCGGCACG ACCACCAGCA CGGTGAACGT GACCGTCAAC 
CCGGTGAACG ATCTGCCCAC GGTCCCGGAC TACATCCAGA CCACGCACGA AGACACGCCC 
GTCAGCGGCC AGGTCATCGG CACCGACGTC GATGGCGACA CGCTGAGCTA CGTGAAGGGC 
AGCGATCCAG CCCACGGCAC GGTCACGGTC AACGCCGATG GCACCTACAC CTACGTGCCC 
GGCGTCAACT TCAACGGCAC CGACAGCTTC ACCGTCACGG TGAGCGACGG CCACGGCGGC 
ACGACCACCA GCACCGTGAC CGTGACGATC AACCCCGTCA ACGACGCCCC CGTGTTCGTC 
GACGGCGGTG GCACCCCGGT GAACACGACA GACGGCTACG TCTTCGGCTA CGACGAGAAC 
CGTCCTGCAG GCGCCGTGCT CGGCACGGTC CACGCCACCG ACGTCGACAG CGCGACCGTC 
ACCTACAGCA TCCTCTCGGG CAACGACAAC GGCTACTTCG CCATCGACCC GGTCACGGGC 
GCGATCAGCC TCACGGCTGC AGGCGCTGCG GCGTTCGTGA ACGACTACGA AGCGGGCGCC 
AACGCGCACG CGCTGGTGGT CGGCGCGAAC GACGGCACGG TCACGACGAA CATCCCCGTC 
ACGCTCAATG AGCAGAACAT CAACGACGCA CCGAAGGCGC CCGACTACAC CAAGACCACG 
AACGAAGACA CGCCAGTCAG CGGCCAAGTG ACTGGCAGCG ACGTCGACGG CGACACGCTG 
ACCTACGTGA AGGGCAGCGA CCCGGCCCAT GGCACGGTGA CAGTCAATGC CGATGGCACC 
TACACCTACG TGCCCGGCGC CAACTTCAAC GGCACCGACA GCTTCACCGT CACGGTGAGC 
GACGGCCACG GTGGCACGAC CACCAGCACG GTGACCGTGA CGATCAACCC CGTCAACGAC 
GCCCCCGTGT TCGTCGACGG CGGTGGCACC CCGGTGAACA CGACAGACGG CTACGTCTTC 
GGCTACGACG AGAACCGGCC CGCAGGCGCC GTGCTCGGCA CGGTCCACGC CACCGACGGC 
GACAGCGCGA CCGTCACCTA CAGCATCCTC TCGGGCAACG ACAACGGCTA CTTCGCCATC 
GACCCGGTCA CGGGCGAGAT CAGCCTCACG CCGGCGGGCG CTGCGGCGTT CGCGAACGAC 
TACGAGGCGG GCGCCAACGC CCACGCGCTG GTGGTCGGCG CGAACGACGG CACGGTCACC 
ACGTCCATCC CCGTCACGCT CAACGAGCAG AACCTCAACG AAGCGCCGAC GGCGCCCGAC 
GACACCAAGA CGACGAACGA AGACACGCCC GTCAGCGGCC AGATCATCGG AAGCGATGCT 
GATGGCGACA CGCTGACCTA CGTGAAGGGC AGCGATCCAG CCCACGGCAC GGTCACGGTC 
AACGCCGATG GCACCTACAC CTACGTGCCC GGCGTCAACT TCAACGGCAC CGACAGCTTC 
ACCGTCACGG TGAGCGACGG CCACGGCGGC ACGACCACCA GCACCGTGAC CGTGACGATC 
AACCCCGTCA ACGACGCCCC CGTGTTCGTC GACGGCGGTG GCACCCCGGT GAACACGACA 
GACGGCTACG TCTTCGGCTA CGACGAGAAC CGTCCTGCAG GCGCCGTGCT CGGCACGGTC 
CACGCCACCG ACGTCGACAG CGCGACCGTC ACCTACAGCA TCCTCTCGGG CAACGACAAC 
GGCTACTTCG CCATCGACCC GGTCACGGGC GCGATCAGCC TCACGCTGGC GGGCGCTGCG 
GCGTTCGTGA ACGACTACGA GGCAGGCGCC AACGCGCACG CGCTGGTGGT CGGCGCGAAC 
GACGGCACGG TCACCACGTC CATCCCCGTC ACGCTCAACG AGCAGAACCT CAACGAAGCA 
CCGACGGCGC CCGACTACAC CAAGACCACG AACGAAGACA CGCCCGTCAG CGGCCAGATC 
ATCGGAAGTG ACGTCGACGG CGACACGCTG AGCTACGTGA AGGGCAGCGA CCCGGCCCAT 
GGCACGGTGA CGGTCAACGC TGATGGCACC TACACCTACG TTCCCGGTGC CAACTTCAAC 
GGCACCGACA GCTTCACCGT CACGGTGAGC GATGGCCACG GTGGCACGAC CACCAGCACG 
GTGAACGTGA CCGTCAACCC GGTGAACGAC GCGCCATCGG CCATGGTGAA CAACGCAGAA 
GCCGTCTCCG AAGGCAGCCT GCCCGGCGGC ATTCCAGCTG CGGGAGAGCC GCCGCTGCAA 
TCGACCGGCA CCATTTCCAT CGCGGACCCG GACAGCGCGG CCGGCGACCT GTCGGTGTCG 
CTGAGTGGCC CCAACGGCGT CACCTCCGGC GGCCAGCCGG TGTCGTGGAC CTGGGACGCG 
GGCACGCACA CGCTCACGGG CAGCGTCACC GTCGGCGGCG TCACCACCGA GGTGATGACC 
GTGGCGGTGG GCAATGTCAG CGCCACGGGC GCGGGGCAGT TCGAGGCGGG CTACACCGTC 
ACGCTGAAGG CGCCGATCGA CCACCTGCCG GGCAACGGCG AAGGCGTGTC GAACCTGCAC 
TTCGAAGCCG TGGTGAGCGA TGGCCAGGCC AGCGGCGCGC CGGTGGGCTT CGAGGTGCCC 
GTCAAGGACG ATGCGCCGGT GCTCGTGAAC GGCGAGCAGG CCGTCGACGT GGCGCCGATC 
GATACCAACC TCATGGTGAT CCTGGACCTT TCCGGGAGCA TGGGCCAGGA AACCCCGACA 
CGCCTCAGCC GTGCGAAAGA GGCGATCCAG AATCTGATCG ACGGCTACGA CCTGTACGGC 
GACGTGCGGG TGCAGCTCGT CACCTTCAGC ACGACCGGGG CCTCGCAGCA GGCCTGGATG 
ACGGCGGCCG AAGCCAAGGC GCTGGTGCAG AACCTGCAGG CCGCTGGCAG CACCAACTAC 
GACGCGGCCC TGGCTGCGGC GATGAACGGC TTCTCGGCCA CCGGCAAGCT GGACGGGGCC 
CAGAACGTGT CCTACTTCCT CACGGACGGC GAGCCGACCC TGGGCGACGG CAATACGGCG 
CAGTTGGCGA ACAGCAGCAA CAGCAGTACG GCCGACAGGG GCATCCAGGC CGGGGAAGAA 
GCGATCTGGA CGAACTTCCT CAACACCCAC CAGATCAACT CGTTCGCACT GGGCCTGGGC 
TCGAGCCTGA ACGCGGAGGC ACAGGCTTTC ATCGACCCCA TCGCCTACAA CGGCAACACC 
GGCGCGAACA CCAATGGCCA GATCATCACC GACACGAGCC AGCTGAACGA CGTGCTGCAA 
GGCACGATCA GCGTGCCACC CACCGTCAGC AACCTGCTGA CCGGCGGTCT CGGCGGCTCG 
TCGGGCTTCG GTGCCGACGG CGGCCATGTG TCCACGCTGA GCATCGACGG CACCACCTAC 
GCCTTCGACA GCAGCACCGG CCTGATGACG AAGACCGGCC CCGCCGCCGG CAGCGACTAC 
AGCTACGACG CGGCGACGCA CCAGGTCACC ATTGCCACGG CGCAGGGCGG CAAGCTGGTC 
GTGGACTTCG ACTCGGGCGA GTTCAGCTAC CAGGTGGCAC CGCGCACCAG CGGCTCGCAC 
AACTACGACG AGACCGTCAG CTACCAGGTG GTCGACCGCG ACGGCGATGC GAGCAACGCG 
GCCACGCAGA CGCTGCACGT CAACTACACG CCCGCAGCGG GGGCGGCAGC GTTCTTCACC 
TCGGCCGACT CGCTGGGGCT GGCCGGCGTC GACGCAGCGA CGGTGTCGCT CGAGCAGCAG 
CAACCGCACG ACGCGCCGCA TTCCCCCTAC GGCGACAGCC CGTGGGGCGG CACGCAGCTG 
TCCGACATGC TGCATGCCTA CAACGCGGCC GAGTCGCTGC AGGTGCTGCT GCAAGCCGCG 
TTCCCGCCGG CCTTTGCGAG CACGCAGGCA TCGCCCACGG TGCTGGCCCT GGCGTCGTCG 
GCCGACTCGC TCACGGCCTA CGCACCGCCC GTGGCCCCTT CGCTCGACGA CGAGCTTCAC 
ATGGGCCTCG CGTTTCACCA CTGA 

 

Protein sequence

MEAVYKSGGA SRKAAADTPL VLDRPSIVSL KIAPESVLKF ERRGGDLVLV LQGGQEVAVR 
GFFAEYPDGG RNDLVLEDGA GVQWWGQYTA PWKDFHFTEI EWTDAGAALL PDGVPGWLLG 
ALGVLGVGAA ASGGGGGGGG GGPAFIPPLL PPQNRGPEGK AEPVVTGQDK PVAGQVQAAD 
PDRDTLNFTV AKGPEHGTVT VDPSTGQFLY TPNPGYEGSD SFEVTVSDGR GGTTTVKVPV 
TVSPVNDAPT APDYTETTNE DTPVSGRVTG SDMDSGDTLT YARGSDPSHG TVTVNPDGTY 
TYTPNPDFNG TDSFTVTVSD GHGGTTTSTV TVTINPVNDA PVFVDGGGTP VNTTDGYVFG 
YDENRPAGTV LGTVHATDVD SATVTYSILS GNDNGYFAID PVTGEISLTP AGAAAFANDY 
EAGANAHALV VGANDGTVTT SIPVTLNEQN LNEAPTAPDD TKTTNEDTPV SGQIIGSDAD 
GDTLTYVKGS DPAHGTVTVN ADGTYTYTPG ANFNGTDSFT VTVSDGHGGT TTSTVNVTVN 
PVNDLPTVPD YIQTTHEDTP VSGQVIGTDV DGDTLSYVKG SDPAHGTVTV NADGTYTYVP 
GVNFNGTDSF TVTVSDGHGG TTTSTVTVTI NPVNDAPVFV DGGGTPVNTT DGYVFGYDEN 
RPAGAVLGTV HATDVDSATV TYSILSGNDN GYFAIDPVTG AISLTAAGAA AFVNDYEAGA 
NAHALVVGAN DGTVTTNIPV TLNEQNINDA PKAPDYTKTT NEDTPVSGQV TGSDVDGDTL 
TYVKGSDPAH GTVTVNADGT YTYVPGANFN GTDSFTVTVS DGHGGTTTST VTVTINPVND 
APVFVDGGGT PVNTTDGYVF GYDENRPAGA VLGTVHATDG DSATVTYSIL SGNDNGYFAI 
DPVTGEISLT PAGAAAFAND YEAGANAHAL VVGANDGTVT TSIPVTLNEQ NLNEAPTAPD 
DTKTTNEDTP VSGQIIGSDA DGDTLTYVKG SDPAHGTVTV NADGTYTYVP GVNFNGTDSF 
TVTVSDGHGG TTTSTVTVTI NPVNDAPVFV DGGGTPVNTT DGYVFGYDEN RPAGAVLGTV 
HATDVDSATV TYSILSGNDN GYFAIDPVTG AISLTLAGAA AFVNDYEAGA NAHALVVGAN 
DGTVTTSIPV TLNEQNLNEA PTAPDYTKTT NEDTPVSGQI IGSDVDGDTL SYVKGSDPAH 
GTVTVNADGT YTYVPGANFN GTDSFTVTVS DGHGGTTTST VNVTVNPVND APSAMVNNAE 
AVSEGSLPGG IPAAGEPPLQ STGTISIADP DSAAGDLSVS LSGPNGVTSG GQPVSWTWDA 
GTHTLTGSVT VGGVTTEVMT VAVGNVSATG AGQFEAGYTV TLKAPIDHLP GNGEGVSNLH 
FEAVVSDGQA SGAPVGFEVP VKDDAPVLVN GEQAVDVAPI DTNLMVILDL SGSMGQETPT 
RLSRAKEAIQ NLIDGYDLYG DVRVQLVTFS TTGASQQAWM TAAEAKALVQ NLQAAGSTNY 
DAALAAAMNG FSATGKLDGA QNVSYFLTDG EPTLGDGNTA QLANSSNSST ADRGIQAGEE 
AIWTNFLNTH QINSFALGLG SSLNAEAQAF IDPIAYNGNT GANTNGQIIT DTSQLNDVLQ 
GTISVPPTVS NLLTGGLGGS SGFGADGGHV STLSIDGTTY AFDSSTGLMT KTGPAAGSDY 
SYDAATHQVT IATAQGGKLV VDFDSGEFSY QVAPRTSGSH NYDETVSYQV VDRDGDASNA 
ATQTLHVNYT PAAGAAAFFT SADSLGLAGV DAATVSLEQQ QPHDAPHSPY GDSPWGGTQL 
SDMLHAYNAA ESLQVLLQAA FPPAFASTQA SPTVLALASS ADSLTAYAPP VAPSLDDELH 
MGLAFHH