| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4585 |
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| Symbol | |
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| ID | 7973283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4851523 |
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| End bp | 4855398 |
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| Gene Length | 3876 bp |
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| Protein Length | 1291 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644795170 |
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| Product | SNF2-related protein |
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| Protein accession | YP_002946457 |
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| Protein GI | 239817547 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCCTTT TTGATCTTTT CAAGCGTGCG GTGGGAACAA AGGCGGACGA GCCAACATTG
AAGTCCACCT GGACGAGCCA AGGTGTTCGC GTTGAATTCG CTCAAGACTT GCAAGAGCCC
ACGCCTGAAG GCCTTTTGGA AGCCATCCAC AACGCTGGTC CTGACGACTC TGTCCTTGGG
GTCTACCTTG CCCAACTCTC TCGCGAAGGG AGATGCAACC TGGACCTGAA AGGTGCGCTC
ATACGCTGGC AAGACGTGTA CGAGCTTCAA GGATCAGTGG AGCACATTGG CGCACTCCAA
CTGCTCGGCC TGCCTCCGCA GGGGCCGTTG CGTCCTGTAC TTGACTGCTC GGGGACGCTA
TCCAGTCAGG ACTTCGAACT GGAGGTAGTC GCTTGGACGG ATGGCATCCA GCAGATTCGC
CCAGATCGTT TGGAAGGCGC CATCGCCATT GTGGGTGATC GGTCGCAAAT GCTCTCGCCG
GCAACGTGGG CGACGATGTT CGAAGTTGCC GCTTTTGGAC TTCGCAGTTC AAGCGATCGT
AACCAGCACT TTCAAGAGCT TGCCTGGGGG CGAATCCGGC GCCTTGCCGA CAAGGCCGGA
GCGCTTTACG CAACGCCATA CCTTGAGACG ACATTTGTCG TGACACCTGA CACCCTGAGA
CTTCCCCTCT CGAGGCAGGA AACTCCGTTT GGGCGGGTGC TGACGGTATC GCCCACCTTC
GAAGGGGCCC CCGATGGATG GTTGACCGCA TTCGATGGCT TCAACTCAGT TCAGCCGCAC
TACGACCTGA CGAGAGGGGC GGGAAGGGTC CGCGTTGTCA TATCGGAGCC GGTTCGCAAA
GTCCTCAATG TCATTAAGCG TCAGATGCCG GGCCGTCGAG TGGCCGGTTC GAAAGCCGAG
AAATTCGTGC ACAACCCGTT TGCCTTCCTC GGAGAGGCTG CATACGAGGT CCTGCGAGAA
GACGAGTTCG AGGCAGACCG CGCCGGGGCC GGCGCGGTCG CGGCCGTTTT CAGCGTCATT
GGCCGCTTTG AGCATGGCAG GGTGAACACA GTGGACCTAC TCGTGACGGA GCACTACGGC
GACGGCGCGG CTAGGACGGA GACCGAAGCA TTCATTGCCC CCGAGCAACT GGAGCGTTTT
CTTGAAGGTC TCAAAGCAGC GCTCGAGCAA GAGCGCGAGC GCTTTCCGTG GGGGGAGTAC
GACCTTAGCC TGGATGGCGA GTCAACGACC CAGCTGGAGC AAGGTCTGCA GCTTGCCAGC
CTGTGGCGAA CTCAACCGGC CGAGCGCATC AACTTCGACG ACATCTATGA ACTTGATGGC
TACAGTGGTC GCATCGAAGG CATTGGCGTG GTTAAGCCCG TTTACGTGCC CGTCTTTCAG
CGGGACAAGA AAGAGGGCGA GAGCGAGGAC GGCTGGGTTC CCTCGGATCT AACGCCGATG
GTTAGGGTGA CTCTGCAAGG TCACGAGGGT CAAGTCCTGG TGCCGCTGAC CAAGCAGTGG
GTCGAAGAGT TCGATATAGA GGTCAAAGAG GCGGAGGACA ATGGCCAGGC GGAGGTGAAG
AACCCTAGTT TGCCCACGGC CATTGCCACA CCGCAAGCTC GAACCCTTGT CGACAGCTTC
AAAGGCATGG TTGGTGCTCA GGAACGGCTC AAGGGCGAAA AGGGAAGCAT GCCCGCTAAG
GAGAAGCGAC CCCGCCAGAC CCTCCTGGTA AAGACCAACT TTCATGACGT CGACTACTTT
GAGGCGCGCC GTGCCACGTT GGCTCTGCCC CAAGATTGGA GGGCTGAGTT GCCGGGTTGC
CTGCGTGCGG GCATCGAGCT GAAAAAGCAC CAGATGTACG GCGTGGCCTG GTTTCAGCAC
CTGGTGTCGA AGGGGCCGGC GGAATGCCGT GGCGCTCTTT TGGCTGACGA CATGGGCCTT
GGGAAGACCC TCCAGCTACT TTCGGTGCTG GCTTGGTACT ACGAAGCCAA CCCGAACGCC
GCTCCGTCGG TCATCTTTGC CCCTAAGAGC CTGCTTGAAA ACTGGGCAAA CGAAGCGGGG
AAGTTTTTTA CCCCCTCGTT CCCGGAAGTT TTGGTGCTCT ATGGCAACGA ACTGAAGGCT
CGTAAGCAAC CGATAAATCT CATTGACAGT CAATTGCAGG ACAGGGGTAT CGTCGAGCTT
CTGAAGCCAA ACTGGTCAGG CGCGGCGAAG GTCATTGTGA CGACATACGA GGTGCTGACC
TCCTACGAGT TCTCGCTCGC CAAACAGGCC TTCGCCTTCC TCATCTGCGA CGAGGCGCAA
CGCATAAAAA CACCGGGCAC GTTGGTTACG CTGGCGGCAA AGAAGCTGAA GGCAGATTTT
CGTATCGCCT GTACGGGCAC TCCAGTGGAG AACTCGCTAG CCGATCTTTG GTGTCTTTTC
GATCTGGTGC AACCGGGCTT GCTAGGCGCG CTTGAGGCAT TCGGAAAGAC TTACCGACGC
CCCATTGAGT GCGAGACCGA ACAGCAGAAG GAGGCGTTGA CAGGTTTACA GATTGCCATT
GCGCCCCAGA CCTTGCGTCG TACGAAGGCA GATATCGCCG ACGAGCTGCC TAAGAAGTAT
TTCGCATGGA AGAAGGTTGG TCTTGGGACG CTGAGCTTCA AGCACTTGCT GGATGAAGAG
GAGAGACTCG AAATTGCAAT GACCGAGCAC CAGCAAATTC TTTACAAGGG CGGACTCAAA
AAATTGCAGG ACGCAGCCAA CGAATCGAAT GGGCGCAAGC GAGCACAGTT GTCCTTTGGG
GCACTGCATT TGATGAAGGC GGTGTGTGCC GAGCCGTATT GTTTGCCAGG AACGAAGTTC
TTGGTTGACA GGTCAGGGCG CGACGTTCAC CTGCGCAACT CACCAAAACT CCAATGGCTG
CTTGAGCGAC TCGTTGTTGT CGAAGCGGCG CAGGAAAAGG CCATCGTTTT CACAGAACTC
CGTGAAACTC AGGCCGCGCT CTACTATTTC CTCAAAGAGA CTTTCGGTAT CCGCCCGTTC
ATCATCAATG GTGACTCGCA GGGCAGGCAA GGCTACATCG ACAAGTTTTC GGCAAAGAGT
GGCTTTGACG TCATCATCCT CTCGACGTTG GCAGCTGGCG CTGGCCTGAA TGTCACAGCC
GCGAATCATG TCTTCCATTT CACGCGTGCC TGGAACCCAT CAAAGGAATC GCAGGCAACC
GACCGAGCGT TCCGCATTGG CCAGGAGCGA GACGTCTTTG TCTACTGTCC AACAGTGGTC
GCAGACAACT TCAGGACATT CGAACTCCGC CTTGATCAGT TGCTCAAGCG CAAAGCAGGA
TTGGCCGGTT CAACGTTGGA CGACGGAGGT CTGGCTGCCA TGTTGAATGG TACAGGTAGC
GATGCAACCT TAACGGAACT GGTTGGCGAA GGGGTGAATG GTGAGTCGCT CCCTAAGCGC
TATCTGACCA TGGACGATGT CGATCGCATG GACGGAGATG GCTTCGAGGT TTTTTGCTGT
CTGTTGTGGA GCAAGCTGGG TTTTCGCTCT ACGGTGACGA CCAAGCGCGG CGGAGACGGG
GGCATCGACG TGGTGGCGTT AAACGGTCGC GAAGGAGCAC TACTTCAATG CAAGAGCTCC
AAGTCAGCCG CGGTCGGCTG GGATGCCATC AAGGAAGTCA CAGCAGGTGC TGCTAGGTAT
CAGGCTCGAT TCTCGGGCAC ACGCTTTAGG CGGATTGCGG TGTCGAATCA AAACTTCACG
AGCAGTGCCG TCGAGCAAGC GGAGGCGAAC CACGTCGACC TTGTCGCCAG GATGCAACTC
GAAGAGTTTC TGGGGCGACA TCCGATGACC AACCTGGAGT TCGATGAGGC GCTGCTGGAG
TGGTCACCTG GGAACGCGAC CGTGTTGGCG TATTGA
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| Protein sequence | MGLFDLFKRA VGTKADEPTL KSTWTSQGVR VEFAQDLQEP TPEGLLEAIH NAGPDDSVLG
VYLAQLSREG RCNLDLKGAL IRWQDVYELQ GSVEHIGALQ LLGLPPQGPL RPVLDCSGTL
SSQDFELEVV AWTDGIQQIR PDRLEGAIAI VGDRSQMLSP ATWATMFEVA AFGLRSSSDR
NQHFQELAWG RIRRLADKAG ALYATPYLET TFVVTPDTLR LPLSRQETPF GRVLTVSPTF
EGAPDGWLTA FDGFNSVQPH YDLTRGAGRV RVVISEPVRK VLNVIKRQMP GRRVAGSKAE
KFVHNPFAFL GEAAYEVLRE DEFEADRAGA GAVAAVFSVI GRFEHGRVNT VDLLVTEHYG
DGAARTETEA FIAPEQLERF LEGLKAALEQ ERERFPWGEY DLSLDGESTT QLEQGLQLAS
LWRTQPAERI NFDDIYELDG YSGRIEGIGV VKPVYVPVFQ RDKKEGESED GWVPSDLTPM
VRVTLQGHEG QVLVPLTKQW VEEFDIEVKE AEDNGQAEVK NPSLPTAIAT PQARTLVDSF
KGMVGAQERL KGEKGSMPAK EKRPRQTLLV KTNFHDVDYF EARRATLALP QDWRAELPGC
LRAGIELKKH QMYGVAWFQH LVSKGPAECR GALLADDMGL GKTLQLLSVL AWYYEANPNA
APSVIFAPKS LLENWANEAG KFFTPSFPEV LVLYGNELKA RKQPINLIDS QLQDRGIVEL
LKPNWSGAAK VIVTTYEVLT SYEFSLAKQA FAFLICDEAQ RIKTPGTLVT LAAKKLKADF
RIACTGTPVE NSLADLWCLF DLVQPGLLGA LEAFGKTYRR PIECETEQQK EALTGLQIAI
APQTLRRTKA DIADELPKKY FAWKKVGLGT LSFKHLLDEE ERLEIAMTEH QQILYKGGLK
KLQDAANESN GRKRAQLSFG ALHLMKAVCA EPYCLPGTKF LVDRSGRDVH LRNSPKLQWL
LERLVVVEAA QEKAIVFTEL RETQAALYYF LKETFGIRPF IINGDSQGRQ GYIDKFSAKS
GFDVIILSTL AAGAGLNVTA ANHVFHFTRA WNPSKESQAT DRAFRIGQER DVFVYCPTVV
ADNFRTFELR LDQLLKRKAG LAGSTLDDGG LAAMLNGTGS DATLTELVGE GVNGESLPKR
YLTMDDVDRM DGDGFEVFCC LLWSKLGFRS TVTTKRGGDG GIDVVALNGR EGALLQCKSS
KSAAVGWDAI KEVTAGAARY QARFSGTRFR RIAVSNQNFT SSAVEQAEAN HVDLVARMQL
EEFLGRHPMT NLEFDEALLE WSPGNATVLA Y
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