| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4568 |
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| Symbol | |
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| ID | 7973266 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4820354 |
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| End bp | 4824145 |
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| Gene Length | 3792 bp |
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| Protein Length | 1263 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644795153 |
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| Product | exodeoxyribonuclease V, beta subunit |
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| Protein accession | YP_002946440 |
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| Protein GI | 239817530 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCATA CCCTGAGCCC CTTGACGCTG CCTTTGTGGG GCAGTCGTCT GATCGAAGCC
AGTGCAGGTA CCGGTAAGAC TTGGACCATT GCCGCGCTGT ATGTGCGTCT CGTGCTGGGA
CACGGTGCGT CGGACCCCGA CCAGGGATTC GGTCGCCCGT TGATCCCGTC TGAGATTTTG
GTGATGACCT TCACGCGAGC GGCCACACGC GAACTGTCTG ACCGAATTCG CGCCCGCCTG
TTGGATGCGG CAAGGTGCTT CCGAGGCGAA TCGCCCGCCG CTGGCGACTC TTTGATGACC
GAGCTCTTGG CCAGCTATGC ACCGGGTTCC GCACGCACGC ATGCGGCGTG GCGGCTGGCC
ATGGCTGCGG AGAGCATGGA CGACGCAGCT GTCCACACCA TCGACGCTTG GTGCCAGCGC
ATGCTGCGCG AGCATGCCTT TGACAGCGGC TGCCTGTTCG ACGAGACACT CACCAGCAAC
GAACTCGTCA TGCTGGGCGA AGCTTCGCAG GACTATTGGC GCCAGCAGAT ATATCCGCTG
ACCGATGCGG CACTGGACGA AGCCATGGCT GTCTGGAGTT CCGTTGACGT GTTGAACAAG
GACGCACGCG CCCTCAAGGA GCAGGTTCTG CCTCCGGGGT GCGGCGCGGG CTCACTCGCT
GAATGCATCG AGCGCGGTTT GAACGATCAG GCTGCCAGGC TCGCCAGCCT CAAGATCGGC
TGGGTTGAGC GCGCGCAGAC CATGCAGACC TGGATCGATG GGCAGATGGC GGCGAAGCCG
TGTCCTTTCG ATGGGCGTCG CATGAGTAAA GCTCATTACC CGCGCTGGCT AGAGGCGCTC
GAGCGATGGG CTCGCGACCC GTTGCTGGAC CGGCCTGACG TCAAGACGGG CGAGACCCGC
TTCACTCCTG ATGGCTTGCG TGAAGCTTGC AAGGCTGGCT TTGACGTCGA TCCGCCAGCT
TGCTTTGCCG AGTTTGAGGC GCTGATGCAC GCATTGAGCG AACTGGAACC CGTCGCCACG
CCGATGCGTC TGCACGCTGC ATTCCACATT GCGGCCCGCC TTGCCACCCT CAAACGGCAA
GCTGGCACCT TTGGCTTTGC AGATATGTTG TCGCGGCTGG ACCAGGCACT CGATCCCGCC
GGCAATGTGG AGGCCGCCGA GCGCTTGCGC AGCCGCATCG TGGCGCAGTA CCCGGTGGCG
CTGGTCGACG AGTTTCAGGA CACGTCCCCG GTGCAGGCCC GGATCTTTGA CCGGCTTTAC
CGCATTGCTG AAAACGACCG CCAGACGGCG CTGTTGCTGA TCGGCGACCC GAAGCAATCA
ATCTACGGCT TTCGGGGCGC AGACATACAC AGCTACCTGA TGGCACGACG CGCGACGGCA
GGGCGGCACT ACATGCTGGG CACAAATCAT CGCTCGACGG CGTCGGTCGT GGCGGCGGTG
AATCATCTGC TGAATCATGC GGAGGTTCGA GACGGCGAGG GCGCTTTCAT GTATCGCCGT
CCTCCTGCGG CGGTGGGCTC GCCCGCTGAG AACCCGCTGC CCTTCCTGTC AGTGGCAGCG
CGCGGTCGTA CAGAGCGACT GGTCGGAGCG AATGGCGCCG CGCCGGCGGT CACGCTGGCG
CTCGATGCCG GCCTGAGCCG CAGCGCGGTG AGTCGGCGTT CCTTCGCTGC GCGCTGCGCG
GAGCGCATTG TTGAGCTCTT GAACGATCCG GCGGTGGGCT TCGAGGCAGA GGGACAAGAC
TTCGCGCGAT TGCGGCCTGC GGACATCGCG GTGCTCGTGC GCACCGGCAA GGAAGCCGCT
GCGGTACAGC GCGAACTGCG TCGTCGCCAT GTGGCCTCGG TTTACCTGTC TGACCGACAG
TCTGTCTTTG CAAGTGCCGA GGCCCAGGAC CTGCTGCACT GGCTGCGCGC GGTGGCATCG
CCCCTTGACA TCCGACTGGC GCGCGCGGCG CTCGCCACGC GCAGCGTCGG GCTTTCCATT
GCCGAGTTGA TGCGATTGGC CGATGACGAC GAAGCATTCG ATGAGCGCAG CGAACAACTG
CGGCAGTTGC ACGTCGTCTG GCAGCAGCAG GGCGTGCTCA CGATGCTTCG GCAGACCTTG
CATCTGTTGG ACCTGCCGGC ACGTTGGCTC GGTACTCTCC CGGTCGATGG CAAACAGGAG
GTCGATACGG CTGGCGGCCA GGACGGTGAA CGCAGGCTGA CCAATTTCAT GCATCTGGCC
GAATTACTGC AGGCGGCCAG CGCCCAGCTC GACGGCGAGC AGGCGCTGGT GCGCTGGCTG
GCTGAACAGA CGCAGGGCGA GCCGACGCGC AACGACGACC AGATCGTGCG TCTTGAAAGC
GATGCGGACC TGGTCAAGGT GGTGACGGTC CATGCGTCCA AGGGGCTCGA ATATCCGCTC
GTGTTCATGC CGTTCGCGAG TGGCTTTCGG CCGGTCGAGC GCAGGACTAC TCGGATGCTC
AACCTCTCCG ATGCCGACGG ACAGCGAAGC CTGCATTTGC ACTTGAGTGA CGCGCACATC
GATGCCGCTG ATAAGGAGCG ACACCGCGAG GACCTGCGGC TGTTGTACGT CGCACTGACG
CGTGCGCGTC ACGCAGTGTG GGTGGGGCTC GCAGCCCTGA AGTCCGGCAA CAGCGATCGC
TGCACGTTCG CACGCAGCGC CATCGGGTAT GTCATTCACG GCCACGAAGA AGTACACCAG
GACGCGCTGA AGACACAGAT TGAGAAGGTG ATCGCGGGCT GTCCCGACGT CGTGCTGGTC
GAGGCACAGC CGATTGAAGC GTTGGCGCGC ACCCCCCTTC AGCCGCGGGA GGCAGCGCCA
GCATTGCGCG ATCTGCATTC CTACACTGCG ACATTCGAGC GCCACTGGAC CATCGGCAGC
TTCTCGGCGT TGGTGCGCGA CCTTCCGTCG ACGGGGGCGG TGGCGGCCAG CATCGCGGTG
GTGCGTGATG ACGAGCGCGT GACCTTGGCG AGCGTGGACG AAGCGGCACT TGCCCCCCAC
GGGATCGCCT CCTGGGATGC CGTGGCGCTG TCCGCTGCCA CTGTGATGGC CGAGGTCGGC
CAACCCTGGC ATCGCTTTCC ACGCGGTGCG ATGCCAGGCA ACTTCCTGCA TGATCAATTG
GAGTGGTTGG CTAGTGAAGA CTTCGACCTG AACCGCTCGC CCGCTCGCTC AGAGCAGTTG
CAGCGTCGCT GCGAGCGTCA AGGCTGGGGC GATCGGGCGA CCGAGGTGCG TGAGTGGCTG
GGCGAGGTGC TACGAACCCC GATACCGCCG TTGGGTGCTG ATCTCGAGAG CGTCGGCACT
GTCTTGCCGG AGATGGAGTT CTGGTTGCCC GTGGATGGGC TGTCCGCATC AGCGATCGAT
GGCCTGTGTC GCGATCACCT GCTCGCAGGG TGCGCGCGTC CGATCTTGCC GGAGCGCGAA
CTCAGGGGCA TGCTGATGGG CTTTGCCGAC GTGGTGTTCG AGTACGGCGG CCGCTACTGG
GTGCTGGACT ACAAATCGAA CCACCTGGGC GAGAGCGATG CCAACTACAC ACCCGAGGCG
TTGCAAGGCG CCATGGCGGC ACACCGGTAC GACGTGCAGG CGGGCGTCTA TCTCCTTGCC
CTGCACCGGT TGCTCCGCGT TCGTCTCGGT TCGCGCTACG ACCCGGAGCA GCACCTGGGT
GGCGCAGTCT TCTTCTTCCT TCGCGGGATT CACGGCGCGA CGCACGGTTG CTATCACGTC
CCGTCCTCCC TGGAGTTGCT CGACGAGTTT GATCGACTCC TGCAAAAGCA ACCTGAGGAG
GTCGCGCCAT GA
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| Protein sequence | MSHTLSPLTL PLWGSRLIEA SAGTGKTWTI AALYVRLVLG HGASDPDQGF GRPLIPSEIL
VMTFTRAATR ELSDRIRARL LDAARCFRGE SPAAGDSLMT ELLASYAPGS ARTHAAWRLA
MAAESMDDAA VHTIDAWCQR MLREHAFDSG CLFDETLTSN ELVMLGEASQ DYWRQQIYPL
TDAALDEAMA VWSSVDVLNK DARALKEQVL PPGCGAGSLA ECIERGLNDQ AARLASLKIG
WVERAQTMQT WIDGQMAAKP CPFDGRRMSK AHYPRWLEAL ERWARDPLLD RPDVKTGETR
FTPDGLREAC KAGFDVDPPA CFAEFEALMH ALSELEPVAT PMRLHAAFHI AARLATLKRQ
AGTFGFADML SRLDQALDPA GNVEAAERLR SRIVAQYPVA LVDEFQDTSP VQARIFDRLY
RIAENDRQTA LLLIGDPKQS IYGFRGADIH SYLMARRATA GRHYMLGTNH RSTASVVAAV
NHLLNHAEVR DGEGAFMYRR PPAAVGSPAE NPLPFLSVAA RGRTERLVGA NGAAPAVTLA
LDAGLSRSAV SRRSFAARCA ERIVELLNDP AVGFEAEGQD FARLRPADIA VLVRTGKEAA
AVQRELRRRH VASVYLSDRQ SVFASAEAQD LLHWLRAVAS PLDIRLARAA LATRSVGLSI
AELMRLADDD EAFDERSEQL RQLHVVWQQQ GVLTMLRQTL HLLDLPARWL GTLPVDGKQE
VDTAGGQDGE RRLTNFMHLA ELLQAASAQL DGEQALVRWL AEQTQGEPTR NDDQIVRLES
DADLVKVVTV HASKGLEYPL VFMPFASGFR PVERRTTRML NLSDADGQRS LHLHLSDAHI
DAADKERHRE DLRLLYVALT RARHAVWVGL AALKSGNSDR CTFARSAIGY VIHGHEEVHQ
DALKTQIEKV IAGCPDVVLV EAQPIEALAR TPLQPREAAP ALRDLHSYTA TFERHWTIGS
FSALVRDLPS TGAVAASIAV VRDDERVTLA SVDEAALAPH GIASWDAVAL SAATVMAEVG
QPWHRFPRGA MPGNFLHDQL EWLASEDFDL NRSPARSEQL QRRCERQGWG DRATEVREWL
GEVLRTPIPP LGADLESVGT VLPEMEFWLP VDGLSASAID GLCRDHLLAG CARPILPERE
LRGMLMGFAD VVFEYGGRYW VLDYKSNHLG ESDANYTPEA LQGAMAAHRY DVQAGVYLLA
LHRLLRVRLG SRYDPEQHLG GAVFFFLRGI HGATHGCYHV PSSLELLDEF DRLLQKQPEE
VAP
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