Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4562 |
Symbol | |
ID | 7973260 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4813756 |
End bp | 4814277 |
Gene Length | 522 bp |
Protein Length | 173 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644795147 |
Product | transcriptional regulator, XRE family |
Protein accession | YP_002946434 |
Protein GI | 239817524 |
COG category | [K] Transcription |
COG ID | [COG1396] Predicted transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGGCCG AGGTGTCTGG CGGCGAACTG GCCAAGACCT CGGGGATTTC TGCCTCGATG CTTTCGCGCA TCGAGCGCGG GCTGGTCTCG CCTTCGGTGG AGACCCTGGA GCGTCTCGCG AATGGTTTGG GGGTGCCGAC GTCGCGGTTC TTCGGGGACC AGGCGCGGCG CACGGACTTC TGCCATGTGC GCGCAGGACA TGGTGTCCTG GTCGATCGGA TCGGCGCGGT GGCGGACTAT CGCTACGAAC TGCTGGGCCA CCTGCTATCG GGCAACCTGT TCGTGGAGCC CTACCTGGTC ACGCTGTTGC CCGGCGCCGA TCCCTATGTG ACCTTCCAGC ACCCCGGCCT CAAGTTCCTG TACTTCCTGT CCGGGGAGGT CCGCTACCGT TACGGCGGCA GGACTGCGGA GGTGAGGGCA GGGGACTCGC TGCTGTTCGA TGCGACGGCG CTGCATGGGA TCGAGGCTAT TCAGACGCAG CCCGTCTCTT ACCTGTCGGT GGTGTTCACG CTGCGAGAGT AG
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Protein sequence | MAAEVSGGEL AKTSGISASM LSRIERGLVS PSVETLERLA NGLGVPTSRF FGDQARRTDF CHVRAGHGVL VDRIGAVADY RYELLGHLLS GNLFVEPYLV TLLPGADPYV TFQHPGLKFL YFLSGEVRYR YGGRTAEVRA GDSLLFDATA LHGIEAIQTQ PVSYLSVVFT LRE
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