| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4539 |
|---|
| Symbol | |
|---|
| ID | 7973237 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4799777 |
|---|
| End bp | 4800709 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644795125 |
|---|
| Product | protein of unknown function DUF159 |
|---|
| Protein accession | YP_002946412 |
|---|
| Protein GI | 239817502 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2135] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGACGCA TGTGCTACTC AGCCCAGATC CGCGCCGACT ACAAGCGGTT CTTCCGCCAG
TTCGGCGGCG TCCTGTCGCT GCGTGCGTTC GCCAAGCTGT ACTACGAGCG CCAGGGCAAC
CCCAGGATCA AGATTCCGAA GGCGGTCGAC GCGGCGTTCA TGAGCCCGGA GTCCGACGAG
GAGCGGGAGA TCAAGGGCCT GATCGACGCC TTCAACGCCG AACAGGCCAT GGCACTCGAG
CAGGATCTCT TCAAGCAGCG CAAGCGACTC GCCGACGCCG AACGCAAGCT CCAGGTCAAG
GCAACGAAGA AGGCGGCGGA GGATGTGCGG ATCGCGACGG CGAAGATCGA GTGGGGTCTC
GGCAAGCTGG CCGACCTGAA CCGTGTCGAG CTCGAACCGC GCGACGCACG GATCTTTCCG
GGCGTGCATG TCCCCGTGAT GATCTGGGAG GACGGGCAGC GAGTCGTCAA GCCCATGCGC
TACCAGTGCC GGCCCGCCGG CAAACCCGCG AAGTTCGATG CGCTCTATCC CGGCACCTAC
AACGCCCGGC GCGACAACCT GGAAGGGTTC TGGAAGGACC TCTTCGGTCT GTCGCACGGG
ATCATGGTCG TCAATGCCTT CTATGAGCAC GTCGACCGGG ATGGCGAGGA CGTGGTGCTC
GAGTTCAGGC CGCGGCCGCA GCAGGACATG CTGGTCGCAT GCCTCTGGTC CGCATGGTCG
GCGCCAGGGG AGCCCGACCT GCTCTCCTTC GCCGCCATTT CCGATGAACC TCCGGCAGAG
ATTGCGGCAG TGGGCCACGA CCGCTGCATC ATTCCGATCA AACCGGAGAA CGTCGATGCG
TGGCTGCGGC CGGATCGCGC GAACCTGGAG GCCTCGTACG CGGTCCTCGA TGACCGCGAG
CGGCCGTACT ACGAGCATAG GCTGGCGGCA TAG
|
|---|
| Protein sequence | MGRMCYSAQI RADYKRFFRQ FGGVLSLRAF AKLYYERQGN PRIKIPKAVD AAFMSPESDE
EREIKGLIDA FNAEQAMALE QDLFKQRKRL ADAERKLQVK ATKKAAEDVR IATAKIEWGL
GKLADLNRVE LEPRDARIFP GVHVPVMIWE DGQRVVKPMR YQCRPAGKPA KFDALYPGTY
NARRDNLEGF WKDLFGLSHG IMVVNAFYEH VDRDGEDVVL EFRPRPQQDM LVACLWSAWS
APGEPDLLSF AAISDEPPAE IAAVGHDRCI IPIKPENVDA WLRPDRANLE ASYAVLDDRE
RPYYEHRLAA
|
|---|
| |