Gene Vapar_4457 details

Gene Information

• Locus tag: Vapar_4457
• ID: 7972745
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 4700057
• End bp: 4701898
• Gene Length: 1842 bp
• Protein Length: 613 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 644795046
• Product: ABC transporter related
• Protein accession: YP_002946334
• Protein GI: 239817424
• COG category: [V] Defense mechanisms
• COG ID: [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.754482
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCAAGT TTCTCTTGCC CAGCCAACTG GTGGCCGAGG TGCCCGAAAA AGCAGGTGCG 
AGCCCGTACG CGGGTGCCCT GCACACGGCG TTCCGCGCCG CCTACCCACT GGTCAAGAGC 
GCGGCCTGGC GCTCGCTGCC CATCAGCCTG TTCGGCCTGC TGCCATCGAT CTTCCTGCTC 
CAGGTGTATG ACCGCGTGCT GTCGCGCAGC GGCGTCTCCA CGCTGGCCGC GCTGGTGTGC 
GGCATCCTGT TCTTTCTTTG CATCGAGTTC TGGCTGCGCT CGGGGCGTTC GCGCCTGTTG 
CGCAATGCGG GCGCCATCAT CGACCACGGC GTGTCGGGCG CGCTGCTGCA TTCGATGCTG 
AACCGTCCGC TGCGTGCGCT CGAAGCGCGC CCGGCCTCGA TCTGGCACCA GTTCTTCCGC 
GACGTGGCCT CGGTGCGCGG CACCGTCACC GGCGGCCTGG CGCAATCGAT CTTCGATCTG 
CCGATGGCGG TCTTCGCACT GGCCGTGATC GGCATCGTGG CCTTGCCGGT ATTGCCGGTG 
GTGGTGCTGT TCCTTGCCAT CATGGTGTTC CTGGCCTGGT GGTGGGCCGA CGAGGTGCGC 
AGCGGGCGGG TCGAGGAAGT GCAGCGCGGC CGCGGCCTCG AGCGCATGAC CTCGGAGATC 
TGCAACGCGC GCGAAACGCT CAAGACGCAG GCCAACGACG GTCCCACCAT CGAGATGTGG 
CGCCAGTCGT ACAACTCCTG GCTGAGCGAA AGCTTCAGCA AGAACGGGCA GATCGAAACC 
GCGCGCGACG GCACCACCGT GCTGATGACG GTGTTCTCGG TCATCGTGGT CACGGTGGGC 
GCCATCTCGG TGATGGAGCA ATGGATGACG GTGGGCGGCC TGGTCGCCTC CAACATGCTG 
GCCCTCAAGG CGCTGCAGCC GGTGGCCGGC CTGGTGTCGA GCTGGCGCTC GCTGGCCGCG 
GCCAAGGAAG CGGCCAAGCG GCTCGAGACG GTGCTTGGCG AGCCGGTGGA AAAAGCGCCC 
ACCGGCATGA CGCTGCCGCA GCCGCTGGGC CGCGTCACCT TGAAGGACGT GAGCTTCAGC 
TTCACGGAAG ACGCGCACCG GCCGGTGCTG GAGAACGTCG ACCTGGACAT CGGGCCGGGC 
GGGCTGCACG TGATCGTCGG GCGCAACGGC GCCGGCAAGT CGACGCTGGT CAAGCTGCTC 
TCGGGCCTGT ACACGCCCAC GCGCGGCGTC ATCAGCATCG GCGAGTACGA CCTTTCGCAA 
TTCGGCCGCG AAGAGCTTTC GCGCTGGATC AGCTACCTCT CGCAGGAGGT GTACTGGTTC 
GGCGGACCGC TGATCGACAC CATGCGCCGC ACGGCCCCGG GCCAGAGCGA CGAGCAGGTG 
GTGGCGGCCT GCAAGCTCTC GGGCGCGCAC GAGTTCATTT CGCGCATGCC CGACGGCTAC 
CGCACCGTGG TGGGCGAGGG CGGCACGGGC CTGTCGGTGG GCGAGCGGCG CAAGCTCGCG 
CTGGCCATGA GCTTCCTGCG CAAGCCCTCG GTGCTGGTGC TCGACGAGCC CAGCAACGAC 
CTGGACTTCC AGAGCGAGCG CACCCTGCTG GCCACGCTGC TCGCGGTGGC CAAGGTGCGC 
ACGGTGGTGG TGGTCACGCA TTCGCTTCGC ATCGTGTCCG CAGCCAGCGT GGTCTACCAC 
GTGACGGGGC AGGGCAACGT CGAACAGGGC ACGGCCGCCG TCATGGTGCC CAAGCTCTTC 
GGCGTGAAGA AGGCGCTGGT GGCGCTCCCC GATTCCACCG CGGGCGAGGA CGATGCCGAC 
GTGCACTCGC AGCAAGCCGC CGCCAACCGT TCCATGGCCT GA 

 

Protein sequence

MIKFLLPSQL VAEVPEKAGA SPYAGALHTA FRAAYPLVKS AAWRSLPISL FGLLPSIFLL 
QVYDRVLSRS GVSTLAALVC GILFFLCIEF WLRSGRSRLL RNAGAIIDHG VSGALLHSML 
NRPLRALEAR PASIWHQFFR DVASVRGTVT GGLAQSIFDL PMAVFALAVI GIVALPVLPV 
VVLFLAIMVF LAWWWADEVR SGRVEEVQRG RGLERMTSEI CNARETLKTQ ANDGPTIEMW 
RQSYNSWLSE SFSKNGQIET ARDGTTVLMT VFSVIVVTVG AISVMEQWMT VGGLVASNML 
ALKALQPVAG LVSSWRSLAA AKEAAKRLET VLGEPVEKAP TGMTLPQPLG RVTLKDVSFS 
FTEDAHRPVL ENVDLDIGPG GLHVIVGRNG AGKSTLVKLL SGLYTPTRGV ISIGEYDLSQ 
FGREELSRWI SYLSQEVYWF GGPLIDTMRR TAPGQSDEQV VAACKLSGAH EFISRMPDGY 
RTVVGEGGTG LSVGERRKLA LAMSFLRKPS VLVLDEPSND LDFQSERTLL ATLLAVAKVR 
TVVVVTHSLR IVSAASVVYH VTGQGNVEQG TAAVMVPKLF GVKKALVALP DSTAGEDDAD 
VHSQQAAANR SMA