| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4455 |
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| Symbol | |
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| ID | 7972743 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4697150 |
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| End bp | 4698706 |
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| Gene Length | 1557 bp |
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| Protein Length | 518 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795044 |
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| Product | outer membrane efflux protein |
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| Protein accession | YP_002946332 |
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| Protein GI | 239817422 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.790161 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGGGCA GCAACGTGGC CGGCCGGCGC CCAGCGGGCA CCGGTGTTCT TTGTGCAGTG
CTGTGCGCGA GCTTTGCGCT TCCTCCGGGC GCCCTGGCGC AGGAGGCGCC CGCGCAGCTG
ATGCCGGCGC GCCGCCTTTC CGCGCCATCG ATCGGCGCCG CCAGCTATGC GCAGCGCGTG
AAGCAGGCGC TCATTGCGCT GTCGCAGGAC TACCCTGAAG TGCAGACCGC GCAAGCCGCC
GCCAACACCA GCAGCTTTGG CGTGGACGCC GCCAAGAAGG CCCGCTACCC GCGCTTCAAG
ATGGGCACCG CCTCCGGCAC CTACAACAGC GGCGCGGACA ACGCGAAGAC CGAGAACTAC
ACCGTGCTCA CCGCCGAGGC GCGCCTGAGC CTGATCGACG GCGGCGCCAT GAACGCCGCG
ATTCGCGCCG CCGAGGCCGG CAACCAGGCC GATGACGAGG CCGTCGTCAC CACTTCGCAG
AAGGTGGTGC TCGATGCGCT GACCGCCTAC CTGCAGGTGC AGCGCTTCGA CCTCAAGAAG
CAGATCGCGC GCAAGTCCAC CGAGGTGGTG GCCGAGCTCT CCAAGGCCGA GGCCCGCCGC
GTGGCGCTGG GCGCCGCCGG CGAGAACGAC CTGAACATGG CGGCCGCGCG CCGCGCCAGC
GTGGCCGCGC GCGAATCCGA CTTCCAGGCG CAGCGCGACG AGGCGCTGGC CAAGTTCAAC
ACCTACTTCA AGTTCACGCC CAACACCGAT TCGCTGCCCG TGCTGGCCGC GCCCGCGTAC
TGGCGCATCG CTTCGCACGA AGAGGCCCTG CGCCGCGCCG AGGAGCGCAG CACCGAAATC
TCCGAAGCCA AGGGCCGCGT GGCGCGCGCC CAGGCTTTGG TCGACCAGCA GGAGGCCAGC
ATCTGGCCGA CCGTGGATGC GGTGGTCGTC AAGAGCAAGG ACCCGCGCGG CGTGTCGCCG
CAAGACCCGA CGCGCGCGGC CTTCGAGCTC AACTGGAACT TCGGCAACGG CTTCGACCGC
CAGCTGCGCC TGAAGTCGGC CCTGGCCGAA GTCGCCAACC AGGAAGCCAA GCTCGAAGGC
GTGAAGCTCA ACCTGCTGGA GCTCACCTCG GCCTCATGGT CGCGCGCCGT GTCCGGGCGC
GAGCGTGAGC GGCAGCTGGC GGAGGCCGTC AGCACATCGG GCCAGGCCTT CCGCGGGCGC
CGCCGGCTGA TGGAGTTCGG CCGCGAAACA CTGCCCGCCG TGCTCGACGC GCAGCTCGAC
TACTACAACC TGCTGTTCGA CTACGTCGAC GCCGTGTTCG ACCTGCGCAT CACCGAGCTG
CGCCTGGCGC GCACCACCGG CGAACTGCGC ATTGACGCTG ACGCGAGCAA TTCCTGGATC
GACCGCATCT TCGGCCCGCC GAACCGGCCC GCGCTGAGCG AAGACGGCCT GCTCACCGCG
CTGTGCATCT CGAGCAACGC AGGCTGCGCC AGCGAGCCTG TTGTGGCCGA GCGCGGCGCC
GGCGCAACCG CAGCGAACCC GCCGCTGCGC CGGGCCGCGC GGCTGGCGAA CCGCTAA
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| Protein sequence | MMGSNVAGRR PAGTGVLCAV LCASFALPPG ALAQEAPAQL MPARRLSAPS IGAASYAQRV
KQALIALSQD YPEVQTAQAA ANTSSFGVDA AKKARYPRFK MGTASGTYNS GADNAKTENY
TVLTAEARLS LIDGGAMNAA IRAAEAGNQA DDEAVVTTSQ KVVLDALTAY LQVQRFDLKK
QIARKSTEVV AELSKAEARR VALGAAGEND LNMAAARRAS VAARESDFQA QRDEALAKFN
TYFKFTPNTD SLPVLAAPAY WRIASHEEAL RRAEERSTEI SEAKGRVARA QALVDQQEAS
IWPTVDAVVV KSKDPRGVSP QDPTRAAFEL NWNFGNGFDR QLRLKSALAE VANQEAKLEG
VKLNLLELTS ASWSRAVSGR ERERQLAEAV STSGQAFRGR RRLMEFGRET LPAVLDAQLD
YYNLLFDYVD AVFDLRITEL RLARTTGELR IDADASNSWI DRIFGPPNRP ALSEDGLLTA
LCISSNAGCA SEPVVAERGA GATAANPPLR RAARLANR
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