| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4450 |
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| Symbol | |
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| ID | 7972738 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4691533 |
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| End bp | 4692468 |
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| Gene Length | 936 bp |
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| Protein Length | 311 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644795039 |
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| Product | Tetratricopeptide domain protein |
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| Protein accession | YP_002946327 |
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| Protein GI | 239817417 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATCC ACGCACTCAC AAAGCTGACG CACCGCCCAA ATAGTTTTAT CCCGACACGC
GCCGCGATTT GTTTGACAAC ACTCGCGATC CTTGGTTGTG CCAGCCCTAA GGATCAATAT
GCAGCAAGCG CCGATGCCCA GCAGCGGATG GCCGCCGAAG CCTCTGCCGA TACCAAGGCG
GGCACCTCCG TCGACACGAA AGAGACCTAT CTGAAGCTCG TCGAACAGAT GCAGCGGGAG
AACCTGTGGT TTGCATCACT GGCGCACATC GATGCACTCG AGCAACGTTG GGGAGTTTCG
CCCGAATCCA CACGTCTGCG CGCCGACGCC TTACGGCAGA CCGAGCAAGC GGCGCAGAGC
GAAAAGGCGT ACAGGCGACT GATGGGCACA CCGCTCGAAG GCGCCGGCTA CCGGGGTCTG
GGCCTCCTGG CTGGTGCTCG CAGCAACTAC GCTGAAGCCG TACTGCTTCT GAAACAAGCC
CAGCGCCACG CGCCGACAGA TGCTCTCCTG CTGAGCGACT TGGGCTATGC CCAATTGCGA
TCAGGTTCGA CGGATGAAGC CCGGCTTCCC TTGATGCAGG CACTGCAGCT TCGCCCTGAC
AGTGCGCAGG CACAGGCAAA CCTCGCGCTA TATCTCGAAC TCACCAATCA GCAAGAGCAA
GCAGCGGCCA TGATGGACGC GAACCGGATG TCGCCCGCCG CGCGTTCGGC GGTCAAGGAA
GCCGCGCAGC AACTGCGTCG CGGCGGAACT GTCGCTATCA CCCCACCTCC CAGTGCCGGG
ACGCCGGTCC GCGACGAAGT TGCTCCGCCG CTCGTTCTCA AAGCTTCGCG TTCGTCCAAC
CTGATTGGCG TACGCACCGC CATTCAGTCG AATCCAGCTG CAAACGCCTC CTCGACAACC
CTGTCACCGA TCTCGATTTC ACGAGGTACA CCATGA
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| Protein sequence | MNIHALTKLT HRPNSFIPTR AAICLTTLAI LGCASPKDQY AASADAQQRM AAEASADTKA
GTSVDTKETY LKLVEQMQRE NLWFASLAHI DALEQRWGVS PESTRLRADA LRQTEQAAQS
EKAYRRLMGT PLEGAGYRGL GLLAGARSNY AEAVLLLKQA QRHAPTDALL LSDLGYAQLR
SGSTDEARLP LMQALQLRPD SAQAQANLAL YLELTNQQEQ AAAMMDANRM SPAARSAVKE
AAQQLRRGGT VAITPPPSAG TPVRDEVAPP LVLKASRSSN LIGVRTAIQS NPAANASSTT
LSPISISRGT P
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