| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4438 |
|---|
| Symbol | |
|---|
| ID | 7974112 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4678455 |
|---|
| End bp | 4679471 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 644795027 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002946315 |
|---|
| Protein GI | 239817405 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAGATCA CCAAACGCCG CTTGCTCGAA AGCGGCGCAG CAGCAGTTGC CGCATCGCTT
TTTGCACCCG GATCGTGGGC CCAGCGCGCC GGCACCGCCG CTGCCGGCGG CGACGCCGCC
TGGCCGACCA AGCCCGTTCG CATCCTTGTG GGGTTTCCCG CCGGCGCATC GCCCGACCTG
GCGGCGCGCG CCATTGCCGA GCCGCTGTCG AAGATCCTGC GCCAGCCGGT CACGGTCGAG
AACAAGCCCG GCGCCAGCGG CAACCTGGTG GCCGACCAGG TGGCCAAGGC GACCGACGAC
CACACCATCG GCGCGCTGAT CAACGGCAAT CTCACCATTG CCAGGCTGCT CAATCCCAAA
CTCAGCTTCG ACCCCGAGAA AGACTTTGCG CCGGTCGGCA TGATCGGCAC CGCGCCGCTG
GTGCTGGCGG TGTCCGGCAG CGCCACCGGC AAGACGGCGG CGGAGCAACT GCTGTGGGTG
CGCAACCTGG GCAGCGCTGG CAAGTACGGC ACGCCGGGCG TGGGCACCGT GGGCCACCTG
GGCATGGAAC TGCTCAAGAG CCGGGCCGCC ATCACCGCGC AGCACAAGCC CTACACCGGC
AATCCGCAGG TCATTGCGGG CTTGCTGGCG GGCGAGATCC AGCTGGCGCT GCTGCCGCCG
GGCCTGGCCA TGCCGCATGT GAAGTCGGGC AAGCTCAAGG CCATTGGCGT GACCTCGCCC
GAGCGCAGCC CGCTGGCCAG CGAACTGCCC ACGATCCGCG ACGCCGACGT GCGCGGCGCC
GACCTCGAGA TCTGGACCGC GCTGGCCGCG CCCGCGGGCA TGAAGCCCGC CGCCATCGCC
AGGCTCAATG CCGCGCTGGC CGAGGTGCTC GGCTCGCCCG AGGTGAGCCA GGCGCTGCTG
AAGACCGGCT GGCAGGCGCA GCCCGGTTCG CCCGACGCGC TGGCCAAGCG CATGCGCGCC
GACACCACGC GCCTGGGCGG GGTCATCATC ATGAAGGGCA TCCACTCGGA GAGCTGA
|
|---|
| Protein sequence | MKITKRRLLE SGAAAVAASL FAPGSWAQRA GTAAAGGDAA WPTKPVRILV GFPAGASPDL
AARAIAEPLS KILRQPVTVE NKPGASGNLV ADQVAKATDD HTIGALINGN LTIARLLNPK
LSFDPEKDFA PVGMIGTAPL VLAVSGSATG KTAAEQLLWV RNLGSAGKYG TPGVGTVGHL
GMELLKSRAA ITAQHKPYTG NPQVIAGLLA GEIQLALLPP GLAMPHVKSG KLKAIGVTSP
ERSPLASELP TIRDADVRGA DLEIWTALAA PAGMKPAAIA RLNAALAEVL GSPEVSQALL
KTGWQAQPGS PDALAKRMRA DTTRLGGVII MKGIHSES
|
|---|
| |