| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4423 |
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| Symbol | |
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| ID | 7974097 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4663909 |
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| End bp | 4665522 |
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| Gene Length | 1614 bp |
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| Protein Length | 537 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644795012 |
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| Product | Sigma 54 interacting domain protein |
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| Protein accession | YP_002946300 |
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| Protein GI | 239817390 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG4650] Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAAC CCATCGTCGT CATCGGCTTC CTCGGCACCC AGCTCGACGC CGGCCAGGGC
GCGGGCCGCT GGAACAAGTG GCGCCCGACG GTCTCGCTCG CGCAGCACGA CGACATGGTC
GTTTCGCGCA TGGAGCTGCT CTACACGCTC AAGCACAAGG CGCTGGCCGA GGTGGTCAAG
GCCGACATCG CCGCCGTGTC GCCCGAGACC ACAGTCAACC TCGTGCCCTT CGACCTCGCG
GACCCGTGGG ACTTCGGCGA GGTCTACACG CGGCTGTACG ACTGGGCGCG CGCCTACACC
TTCGACACCG AGCGCGAGCA GTACTGGACG CATATCACCA CCGGCACGCA CGTGGCGCAG
ATCTGCATGT TCCTGCTGTC GGAATCGCGC GTGGTGCCGG GCGTGCTCGC GCAGACCTCG
CCGCCCCGGA AGCAGCGCGA AGGCGAGGCC GGCAAGTGCA CGCTGATCGA CCTCGACCTG
TCGCGCTACG ACGTGATCGC GCGGCGCTTC GATGCGGAGC AGCGCGACGC GGTCGCGTTC
CTGAAGAGCG GCATTGCCAC GCGCAATGCG CGCTTCAATG CGCTGATCGA CGAGATCGAG
CGCGTGGCCG TGCGTTCGCG CGCGCCGATC CTGCTGGTGG GGCCGACGGG TGCGGGCAAG
TCCTTCCTGG CGCGGCGCAT GTTCGAGCTG AAGCAGGCGC GCCACCAGAT GAGCGGGCCC
TTCGTCGAAG TGAACTGCGC CACGCTGCGC GGCGACGGCG CGGCCTCCAC GCTGTTCGGC
CACAGGAAGG GTTCCTTCAC CGGCGCCGCA AGCGACCGGG CCGGGCTGCT GCGCACGGCG
AACCAGGGCG CGCTGTTCCT CGACGAGATC GGCGAACTCG GGCTCGACGA GCAGGCGATG
CTGCTCAAGG CCATCGAGGA GAAGCGCTTC TTCCCGGTGG GCGCCGACAA GGAAGTGGAG
AGCGACTTCC AGCTGATCGC CGGCACCAAC CGCGACCTGC GCAGCGACGT GGCGCAGGGC
CGCTTTCGCG AAGACCTGTT CGCGCGCATC AATCTCTGGA CCTACAACCT GCCCGGCCTC
GCGCAGCGGC CCGAGGACAT CGAACCCAAC ATCGACCACC TGCTGGTCAT CCATGCGGCC
GAGAACCACC GCGTGGTGCG CTTCAACGCC GAGGCGCGCG CGGCCTACCT GCGCTTCGCG
CAGAGCGGCG AGGCGCTGTG GTGCGGCAAC TTCCGCGACC TCTCGGCCAG CGTGACGCGG
CTGGCCACGC TGGCGGACGG CGGGCGCATT CCGGTGGCGC TGGTCGAAGC GGAGATCGAG
CGGCTGCGCT GGCTCTGGAA CCGCGAGGGC CCGGCCAGGC GAAATGCAGG CGCTGCCGAC
ATCGACCTCG GCAGCCTGCT CGGCGACGGC CGCGCGGCCG CGCTCGACCT GTTCGACCGG
CTGCAGCTCG AAGCGGTGGT GCGTGTGTGC CGCGACTCGC GCAGCCTGTC GGATGCGGGG
CGGCAGCTCT TCCAGGCCTC GCGCGCGCAG CGCAGCGTGG TGAACGATGC CGACCGGCTG
CGCAAGTACC TGGCCAAACA CGGGCTCGAA TGGAGCCGCA TCGCGGCGGG CTGA
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| Protein sequence | MKKPIVVIGF LGTQLDAGQG AGRWNKWRPT VSLAQHDDMV VSRMELLYTL KHKALAEVVK
ADIAAVSPET TVNLVPFDLA DPWDFGEVYT RLYDWARAYT FDTEREQYWT HITTGTHVAQ
ICMFLLSESR VVPGVLAQTS PPRKQREGEA GKCTLIDLDL SRYDVIARRF DAEQRDAVAF
LKSGIATRNA RFNALIDEIE RVAVRSRAPI LLVGPTGAGK SFLARRMFEL KQARHQMSGP
FVEVNCATLR GDGAASTLFG HRKGSFTGAA SDRAGLLRTA NQGALFLDEI GELGLDEQAM
LLKAIEEKRF FPVGADKEVE SDFQLIAGTN RDLRSDVAQG RFREDLFARI NLWTYNLPGL
AQRPEDIEPN IDHLLVIHAA ENHRVVRFNA EARAAYLRFA QSGEALWCGN FRDLSASVTR
LATLADGGRI PVALVEAEIE RLRWLWNREG PARRNAGAAD IDLGSLLGDG RAAALDLFDR
LQLEAVVRVC RDSRSLSDAG RQLFQASRAQ RSVVNDADRL RKYLAKHGLE WSRIAAG
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