| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4419 |
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| Symbol | |
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| ID | 7974093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4659375 |
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| End bp | 4660412 |
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| Gene Length | 1038 bp |
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| Protein Length | 345 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795008 |
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| Product | RNA 3'-phosphate cyclase |
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| Protein accession | YP_002946296 |
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| Protein GI | 239817386 |
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| COG category | [A] RNA processing and modification |
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| COG ID | [COG0430] RNA 3'-terminal phosphate cyclase |
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| TIGRFAM ID | [TIGR03399] RNA 3'-phosphate cyclase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.65094 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGAAC TCGACGGTTC GCAAGGCGAG GGCGGCGGGC AGATCCTGCG CACGAGCCTG
GCGCTTTCGG TGGCCACGGG CCAGCCAGTG GCCATCGAGA AGATTCGCGC CGGCCGCGCC
AAGCCGGGCC TGATGCGCCA GCACCTGGCC TGCGTGAATG CAGCGGCACA GATCAGCGGC
ACGCAGGTCG AAGGGGCCGA GCTCGGATCG CAGTCGCTGC GCTTCGTGCC GGGGCCGGTG
CGCGCGGGCG ACTATCGCTT CGCGATTGCC AGCGCGGGCA GCTGCATGCT GGTGTTGCAG
ACGGTGCTGC CGCCGCTGCT GCTGGCCGGT GCGCCGAGCC ATCTGCATCT GAGCGGCGGC
ACGCACAACC CGATGGCGCC GCCCTTTCAT TTCCTGGAGC GCGCCTTCGC ACCGCTGGTG
CGCCGCCTGG GCGCGGACCT GCAGCTGGTG CTGCGCCGCT GCGGCTTCTA TCCGGCCGGC
GGCGGGGAGG TCGAAGCGGC CATCGTGCCG GCGGCCGATG GGCTGCGGCC CTTCGATTTG
ATGGGCCGCG GCGCGCTGCT GTCGAGCCAT GCGGAGTGCC TGGCGCCGGG GCTTGCGCGC
CACATTGCCG TGCGCGAACT GGAGACGCTG GGCAAGGCCA TGGAATGGTC CGGCGAGCAG
CTGCGCACCG CAGCGGCGCG CCAGAACGAA GGCCCCGGCA ACGCGCTGCT TGCCACGCTG
GCGTACGAGC ATGTCACCGA GGTCTTCACG GCTTTCGGCG AAAAGTCGCT GAGCGCCGAG
CAGGTGGCGC ACGGCCTGGT GAAGGAGCTG CGCGAATTCC AGAAAAGCCA GGCGGCCGTG
GGCCCGCACC TGGCCGATCA GCTGGCCCTG CTGCTGGGCC TGGCGGCATG GCAGAGCGGC
CGCGGCGGCG CCTTCACCTG CAGCGAAGTG ACCGAGCACA CGCGCACCAA CTGCGCGGTG
ATCGAGCGTT TCCTGCCGGT GCGCTATGCC ATCGCGCAAG CGCCGGGCGC GGCCACCGTG
ACGGTGGCGC CGGCCTGA
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| Protein sequence | MIELDGSQGE GGGQILRTSL ALSVATGQPV AIEKIRAGRA KPGLMRQHLA CVNAAAQISG
TQVEGAELGS QSLRFVPGPV RAGDYRFAIA SAGSCMLVLQ TVLPPLLLAG APSHLHLSGG
THNPMAPPFH FLERAFAPLV RRLGADLQLV LRRCGFYPAG GGEVEAAIVP AADGLRPFDL
MGRGALLSSH AECLAPGLAR HIAVRELETL GKAMEWSGEQ LRTAAARQNE GPGNALLATL
AYEHVTEVFT AFGEKSLSAE QVAHGLVKEL REFQKSQAAV GPHLADQLAL LLGLAAWQSG
RGGAFTCSEV TEHTRTNCAV IERFLPVRYA IAQAPGAATV TVAPA
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